Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS13CQ709C8 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS13CQ709C8 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13CQ709C8 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS13CQ709C8 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS13CQ709C8 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13CQ709C8 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13CQ709C8 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13CQ709C8 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13CQ709C8 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13CQ709C8 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS13CQ709C8 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS13CQ709C8 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS13CQ709C8 ST7-205ENST00000393446 2114 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS13CQ709C8 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS13CQ709C8 AL031432.3-201ENST00000607698 485 ntBASIC20.22■□□□□ 0.83
VPS13CQ709C8 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13CQ709C8 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13CQ709C8 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS13CQ709C8 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13CQ709C8 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13CQ709C8 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13CQ709C8 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13CQ709C8 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13CQ709C8 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS13CQ709C8 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS13CQ709C8 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS13CQ709C8 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS13CQ709C8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13CQ709C8 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS13CQ709C8 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VPS13CQ709C8 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13CQ709C8 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13CQ709C8 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS13CQ709C8 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13CQ709C8 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS13CQ709C8 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13CQ709C8 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13CQ709C8 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13CQ709C8 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VPS13CQ709C8 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS13CQ709C8 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
VPS13CQ709C8 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VPS13CQ709C8 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS13CQ709C8 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS13CQ709C8 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.19■□□□□ 0.82
VPS13CQ709C8 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS13CQ709C8 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13CQ709C8 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13CQ709C8 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13CQ709C8 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS13CQ709C8 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
VPS13CQ709C8 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS13CQ709C8 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
VPS13CQ709C8 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
VPS13CQ709C8 SUDS3P1-201ENST00000505831 966 ntBASIC20.17■□□□□ 0.82
VPS13CQ709C8 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS13CQ709C8 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS13CQ709C8 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS13CQ709C8 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VPS13CQ709C8 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS13CQ709C8 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13CQ709C8 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13CQ709C8 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13CQ709C8 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
VPS13CQ709C8 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
VPS13CQ709C8 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
VPS13CQ709C8 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
VPS13CQ709C8 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS13CQ709C8 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
VPS13CQ709C8 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13CQ709C8 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13CQ709C8 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS13CQ709C8 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VPS13CQ709C8 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13CQ709C8 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13CQ709C8 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS13CQ709C8 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13CQ709C8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
VPS13CQ709C8 MIR3621-201ENST00000580529 85 ntBASIC20.15■□□□□ 0.82
VPS13CQ709C8 LINC01003-201ENST00000564834 1764 ntBASIC20.15■□□□□ 0.82
VPS13CQ709C8 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS13CQ709C8 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13CQ709C8 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.82
VPS13CQ709C8 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VPS13CQ709C8 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13CQ709C8 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS13CQ709C8 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VPS13CQ709C8 AC106739.1-201ENST00000617035 715 ntBASIC20.14■□□□□ 0.81
VPS13CQ709C8 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13CQ709C8 AC120024.1-201ENST00000562672 995 ntBASIC20.14■□□□□ 0.81
VPS13CQ709C8 DRD5P2-201ENST00000421395 2012 ntBASIC20.14■□□□□ 0.81
VPS13CQ709C8 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13CQ709C8 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.13■□□□□ 0.81
VPS13CQ709C8 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
VPS13CQ709C8 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.13■□□□□ 0.81
VPS13CQ709C8 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS13CQ709C8 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13CQ709C8 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13CQ709C8 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms