Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RPUSD3Q6P087 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.88■■□□□ 1.09
RPUSD3Q6P087 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.88■■□□□ 1.09
RPUSD3Q6P087 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
RPUSD3Q6P087 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RPUSD3Q6P087 AC019069.1-201ENST00000610008 1333 ntBASIC21.87■■□□□ 1.09
RPUSD3Q6P087 AC142472.1-201ENST00000612013 1741 ntBASIC21.87■■□□□ 1.09
RPUSD3Q6P087 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
RPUSD3Q6P087 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.87■■□□□ 1.09
RPUSD3Q6P087 MIR4787-201ENST00000607364 84 ntBASIC21.87■■□□□ 1.09
RPUSD3Q6P087 BX255925.1-201ENST00000566954 1854 ntBASIC21.87■■□□□ 1.09
RPUSD3Q6P087 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RPUSD3Q6P087 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RPUSD3Q6P087 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
RPUSD3Q6P087 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RPUSD3Q6P087 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RPUSD3Q6P087 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RPUSD3Q6P087 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RPUSD3Q6P087 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RPUSD3Q6P087 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RPUSD3Q6P087 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.85■■□□□ 1.09
RPUSD3Q6P087 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RPUSD3Q6P087 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RPUSD3Q6P087 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
RPUSD3Q6P087 AC137630.3-201ENST00000607245 391 ntBASIC21.85■■□□□ 1.09
RPUSD3Q6P087 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RPUSD3Q6P087 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.84■■□□□ 1.09
RPUSD3Q6P087 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.84■■□□□ 1.09
RPUSD3Q6P087 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.84■■□□□ 1.09
RPUSD3Q6P087 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RPUSD3Q6P087 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RPUSD3Q6P087 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
RPUSD3Q6P087 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RPUSD3Q6P087 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RPUSD3Q6P087 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
RPUSD3Q6P087 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.83■■□□□ 1.08
RPUSD3Q6P087 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPUSD3Q6P087 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPUSD3Q6P087 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.82■■□□□ 1.08
RPUSD3Q6P087 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.82■■□□□ 1.08
RPUSD3Q6P087 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RPUSD3Q6P087 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RPUSD3Q6P087 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPUSD3Q6P087 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPUSD3Q6P087 AL121749.1-202ENST00000609313 2153 ntBASIC21.81■■□□□ 1.08
RPUSD3Q6P087 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RPUSD3Q6P087 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.81■■□□□ 1.08
RPUSD3Q6P087 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
RPUSD3Q6P087 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.81■■□□□ 1.08
RPUSD3Q6P087 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.81■■□□□ 1.08
RPUSD3Q6P087 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.81■■□□□ 1.08
RPUSD3Q6P087 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPUSD3Q6P087 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RPUSD3Q6P087 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPUSD3Q6P087 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPUSD3Q6P087 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
RPUSD3Q6P087 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RPUSD3Q6P087 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
RPUSD3Q6P087 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RPUSD3Q6P087 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RPUSD3Q6P087 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RPUSD3Q6P087 AC021242.3-201ENST00000607598 1377 ntBASIC21.78■■□□□ 1.08
RPUSD3Q6P087 AC008406.3-201ENST00000620001 1374 ntBASIC21.78■■□□□ 1.08
RPUSD3Q6P087 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
RPUSD3Q6P087 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
RPUSD3Q6P087 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RPUSD3Q6P087 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.78■■□□□ 1.08
RPUSD3Q6P087 AC120024.1-201ENST00000562672 995 ntBASIC21.78■■□□□ 1.08
RPUSD3Q6P087 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
RPUSD3Q6P087 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPUSD3Q6P087 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPUSD3Q6P087 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPUSD3Q6P087 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPUSD3Q6P087 UNC93B8-201ENST00000511903 705 ntBASIC21.77■■□□□ 1.08
RPUSD3Q6P087 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RPUSD3Q6P087 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RPUSD3Q6P087 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
RPUSD3Q6P087 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RPUSD3Q6P087 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
RPUSD3Q6P087 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms