Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PTCHD3Q3KNS1 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
PTCHD3Q3KNS1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PTCHD3Q3KNS1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
PTCHD3Q3KNS1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTCHD3Q3KNS1 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.34■■□□□ 1.33
PTCHD3Q3KNS1 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.34■■□□□ 1.33
PTCHD3Q3KNS1 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.34■■□□□ 1.33
PTCHD3Q3KNS1 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PTCHD3Q3KNS1 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC23.34■■□□□ 1.33
PTCHD3Q3KNS1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PTCHD3Q3KNS1 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
PTCHD3Q3KNS1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
PTCHD3Q3KNS1 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
PTCHD3Q3KNS1 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.33■■□□□ 1.33
PTCHD3Q3KNS1 DUX4L18-201ENST00000553347 1267 ntBASIC23.33■■□□□ 1.33
PTCHD3Q3KNS1 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
PTCHD3Q3KNS1 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
PTCHD3Q3KNS1 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
PTCHD3Q3KNS1 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PTCHD3Q3KNS1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
PTCHD3Q3KNS1 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PTCHD3Q3KNS1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC23.31■■□□□ 1.32
PTCHD3Q3KNS1 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
PTCHD3Q3KNS1 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.31■■□□□ 1.32
PTCHD3Q3KNS1 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
PTCHD3Q3KNS1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.31■■□□□ 1.32
PTCHD3Q3KNS1 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 RAP2CP1-202ENST00000605179 643 ntBASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PTCHD3Q3KNS1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTCHD3Q3KNS1 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.29■■□□□ 1.32
PTCHD3Q3KNS1 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTCHD3Q3KNS1 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTCHD3Q3KNS1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTCHD3Q3KNS1 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTCHD3Q3KNS1 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PTCHD3Q3KNS1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PTCHD3Q3KNS1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC23.28■■□□□ 1.32
PTCHD3Q3KNS1 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PTCHD3Q3KNS1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PTCHD3Q3KNS1 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PTCHD3Q3KNS1 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
PTCHD3Q3KNS1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
PTCHD3Q3KNS1 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PTCHD3Q3KNS1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
PTCHD3Q3KNS1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PTCHD3Q3KNS1 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.26■■□□□ 1.31
PTCHD3Q3KNS1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCHD3Q3KNS1 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCHD3Q3KNS1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PTCHD3Q3KNS1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.25■■□□□ 1.31
PTCHD3Q3KNS1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC23.25■■□□□ 1.31
PTCHD3Q3KNS1 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PTCHD3Q3KNS1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTCHD3Q3KNS1 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTCHD3Q3KNS1 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PTCHD3Q3KNS1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PTCHD3Q3KNS1 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCHD3Q3KNS1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PTCHD3Q3KNS1 DUX4L9-201ENST00000449051 1259 ntBASIC23.24■■□□□ 1.31
PTCHD3Q3KNS1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC23.24■■□□□ 1.31
PTCHD3Q3KNS1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.24■■□□□ 1.31
PTCHD3Q3KNS1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.24■■□□□ 1.31
PTCHD3Q3KNS1 AC097639.1-201ENST00000565519 1891 ntBASIC23.24■■□□□ 1.31
PTCHD3Q3KNS1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCHD3Q3KNS1 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PTCHD3Q3KNS1 SPCS2P3-201ENST00000500401 656 ntBASIC23.23■■□□□ 1.31
PTCHD3Q3KNS1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC23.23■■□□□ 1.31
PTCHD3Q3KNS1 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
PTCHD3Q3KNS1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PTCHD3Q3KNS1 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC23.23■■□□□ 1.31
PTCHD3Q3KNS1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.22■■□□□ 1.31
PTCHD3Q3KNS1 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PTCHD3Q3KNS1 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC23.22■■□□□ 1.31
PTCHD3Q3KNS1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC23.22■■□□□ 1.31
PTCHD3Q3KNS1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC23.22■■□□□ 1.31
PTCHD3Q3KNS1 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PTCHD3Q3KNS1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PTCHD3Q3KNS1 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PTCHD3Q3KNS1 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms