Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC28.26■■■□□ 2.11
SHMT1P34896 AC022616.5-201ENST00000518796 181 ntBASIC28.26■■■□□ 2.11
SHMT1P34896 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC28.25■■■□□ 2.11
SHMT1P34896 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHMT1P34896 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
SHMT1P34896 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
SHMT1P34896 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
SHMT1P34896 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC28.25■■■□□ 2.11
SHMT1P34896 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC28.25■■■□□ 2.11
SHMT1P34896 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
SHMT1P34896 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHMT1P34896 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
SHMT1P34896 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC28.24■■■□□ 2.11
SHMT1P34896 RNF146-205ENST00000477776 762 ntTSL 3 BASIC28.24■■■□□ 2.11
SHMT1P34896 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.24■■■□□ 2.11
SHMT1P34896 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHMT1P34896 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC28.23■■■□□ 2.11
SHMT1P34896 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
SHMT1P34896 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHMT1P34896 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC28.23■■■□□ 2.11
SHMT1P34896 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHMT1P34896 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
SHMT1P34896 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC28.22■■■□□ 2.11
SHMT1P34896 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SHMT1P34896 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC28.22■■■□□ 2.11
SHMT1P34896 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC28.22■■■□□ 2.11
SHMT1P34896 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC28.22■■■□□ 2.11
SHMT1P34896 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC28.22■■■□□ 2.11
SHMT1P34896 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.2■■■□□ 2.11
SHMT1P34896 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC28.2■■■□□ 2.11
SHMT1P34896 PKM-203ENST00000389093 2279 ntTSL 5 BASIC28.2■■■□□ 2.1
SHMT1P34896 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHMT1P34896 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
SHMT1P34896 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC28.19■■■□□ 2.1
SHMT1P34896 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC28.19■■■□□ 2.1
SHMT1P34896 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC28.19■■■□□ 2.1
SHMT1P34896 SNAI3-AS1-204ENST00000567997 2048 ntBASIC28.18■■■□□ 2.1
SHMT1P34896 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
SHMT1P34896 KRT18P24-201ENST00000344739 1156 ntBASIC28.18■■■□□ 2.1
SHMT1P34896 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHMT1P34896 AC239859.2-201ENST00000444165 318 ntBASIC28.18■■■□□ 2.1
SHMT1P34896 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC28.18■■■□□ 2.1
SHMT1P34896 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SHMT1P34896 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SHMT1P34896 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
SHMT1P34896 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.17■■■□□ 2.1
SHMT1P34896 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SHMT1P34896 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC28.17■■■□□ 2.1
SHMT1P34896 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC28.17■■■□□ 2.1
SHMT1P34896 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
SHMT1P34896 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
SHMT1P34896 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHMT1P34896 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHMT1P34896 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC28.16■■■□□ 2.1
SHMT1P34896 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SHMT1P34896 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
SHMT1P34896 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHMT1P34896 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC28.15■■■□□ 2.1
SHMT1P34896 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
SHMT1P34896 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC28.15■■■□□ 2.1
SHMT1P34896 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC28.15■■■□□ 2.1
SHMT1P34896 Z92544.1-202ENST00000571933 1220 ntBASIC28.15■■■□□ 2.1
SHMT1P34896 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
SHMT1P34896 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC28.15■■■□□ 2.1
SHMT1P34896 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SHMT1P34896 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHMT1P34896 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHMT1P34896 AC120024.1-201ENST00000562672 995 ntBASIC28.14■■■□□ 2.1
SHMT1P34896 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
SHMT1P34896 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SHMT1P34896 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHMT1P34896 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC28.13■■■□□ 2.09
SHMT1P34896 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SHMT1P34896 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
SHMT1P34896 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC28.13■■■□□ 2.09
SHMT1P34896 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC28.12■■■□□ 2.09
SHMT1P34896 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHMT1P34896 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC28.12■■■□□ 2.09
SHMT1P34896 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
SHMT1P34896 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
SHMT1P34896 THA1P-201ENST00000590384 1145 ntBASIC28.12■■■□□ 2.09
SHMT1P34896 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SHMT1P34896 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHMT1P34896 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC28.11■■■□□ 2.09
SHMT1P34896 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC28.11■■■□□ 2.09
SHMT1P34896 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC28.11■■■□□ 2.09
SHMT1P34896 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SHMT1P34896 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
SHMT1P34896 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SHMT1P34896 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
SHMT1P34896 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC28.1■■■□□ 2.09
SHMT1P34896 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
SHMT1P34896 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC28.1■■■□□ 2.09
SHMT1P34896 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHMT1P34896 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHMT1P34896 AL592295.1-201ENST00000400984 884 ntBASIC28.09■■■□□ 2.09
SHMT1P34896 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
SHMT1P34896 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC28.09■■■□□ 2.09
SHMT1P34896 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SHMT1P34896 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms