Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.73■■□□□ 1.39
MSH3P20585 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH3P20585 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.73■■□□□ 1.39
MSH3P20585 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
MSH3P20585 KRT18P10-201ENST00000388836 1287 ntBASIC23.73■■□□□ 1.39
MSH3P20585 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSH3P20585 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.73■■□□□ 1.39
MSH3P20585 AC004987.1-201ENST00000428627 508 ntBASIC23.72■■□□□ 1.39
MSH3P20585 DUX4L18-201ENST00000553347 1267 ntBASIC23.72■■□□□ 1.39
MSH3P20585 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC23.72■■□□□ 1.39
MSH3P20585 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC23.72■■□□□ 1.39
MSH3P20585 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC23.72■■□□□ 1.39
MSH3P20585 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
MSH3P20585 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH3P20585 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSH3P20585 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH3P20585 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH3P20585 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSH3P20585 ATP5G2P3-201ENST00000429083 425 ntBASIC23.71■■□□□ 1.39
MSH3P20585 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
MSH3P20585 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
MSH3P20585 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC23.7■■□□□ 1.38
MSH3P20585 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.7■■□□□ 1.38
MSH3P20585 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC23.7■■□□□ 1.38
MSH3P20585 AC096887.2-201ENST00000623443 1957 ntBASIC23.7■■□□□ 1.38
MSH3P20585 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH3P20585 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH3P20585 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH3P20585 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC23.69■■□□□ 1.38
MSH3P20585 TSPY13P-201ENST00000338964 914 ntBASIC23.69■■□□□ 1.38
MSH3P20585 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
MSH3P20585 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH3P20585 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.69■■□□□ 1.38
MSH3P20585 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
MSH3P20585 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
MSH3P20585 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
MSH3P20585 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
MSH3P20585 IDNK-203ENST00000405990 629 ntTSL 2 BASIC23.67■■□□□ 1.38
MSH3P20585 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
MSH3P20585 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
MSH3P20585 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH3P20585 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
MSH3P20585 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH3P20585 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH3P20585 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC23.66■■□□□ 1.38
MSH3P20585 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.66■■□□□ 1.38
MSH3P20585 AL033527.3-201ENST00000566366 1196 ntBASIC23.66■■□□□ 1.38
MSH3P20585 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
MSH3P20585 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH3P20585 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH3P20585 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
MSH3P20585 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.65■■□□□ 1.38
MSH3P20585 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.65■■□□□ 1.38
MSH3P20585 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
MSH3P20585 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH3P20585 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
MSH3P20585 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
MSH3P20585 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
MSH3P20585 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
MSH3P20585 HYI-210ENST00000486909 905 ntTSL 5 BASIC23.64■■□□□ 1.37
MSH3P20585 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
MSH3P20585 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
MSH3P20585 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
MSH3P20585 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
MSH3P20585 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH3P20585 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH3P20585 RPS2P7-201ENST00000447334 885 ntBASIC23.63■■□□□ 1.37
MSH3P20585 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH3P20585 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC23.63■■□□□ 1.37
MSH3P20585 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH3P20585 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
MSH3P20585 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
MSH3P20585 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
MSH3P20585 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.62■■□□□ 1.37
MSH3P20585 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH3P20585 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH3P20585 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH3P20585 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH3P20585 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.61■■□□□ 1.37
MSH3P20585 AC139795.1-202ENST00000500444 432 ntBASIC23.61■■□□□ 1.37
MSH3P20585 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH3P20585 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
MSH3P20585 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
MSH3P20585 BHLHE23-202ENST00000612929 1109 ntBASIC23.61■■□□□ 1.37
MSH3P20585 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
MSH3P20585 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC23.61■■□□□ 1.37
MSH3P20585 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH3P20585 AC020928.2-201ENST00000588717 2197 ntBASIC23.6■■□□□ 1.37
MSH3P20585 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH3P20585 GUK1-208ENST00000366728 842 ntTSL 2 BASIC23.6■■□□□ 1.37
MSH3P20585 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH3P20585 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
MSH3P20585 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
MSH3P20585 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH3P20585 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH3P20585 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC23.59■■□□□ 1.37
MSH3P20585 AC087393.1-201ENST00000582896 145 ntBASIC23.59■■□□□ 1.37
MSH3P20585 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC23.59■■□□□ 1.37
MSH3P20585 AC097639.1-201ENST00000565519 1891 ntBASIC23.59■■□□□ 1.37
MSH3P20585 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms