Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
COL1A1P02452 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
COL1A1P02452 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC29.19■■■□□ 2.26
COL1A1P02452 TK2-216ENST00000564917 1156 ntTSL 3 BASIC29.19■■■□□ 2.26
COL1A1P02452 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
COL1A1P02452 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC29.18■■■□□ 2.26
COL1A1P02452 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
COL1A1P02452 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
COL1A1P02452 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
COL1A1P02452 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC29.18■■■□□ 2.26
COL1A1P02452 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC29.17■■■□□ 2.26
COL1A1P02452 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL1A1P02452 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC29.17■■■□□ 2.26
COL1A1P02452 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
COL1A1P02452 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
COL1A1P02452 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL1A1P02452 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC29.16■■■□□ 2.26
COL1A1P02452 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC29.16■■■□□ 2.26
COL1A1P02452 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC29.16■■■□□ 2.26
COL1A1P02452 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL1A1P02452 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL1A1P02452 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL1A1P02452 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC29.15■■■□□ 2.26
COL1A1P02452 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL1A1P02452 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC29.15■■■□□ 2.26
COL1A1P02452 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
COL1A1P02452 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC29.15■■■□□ 2.26
COL1A1P02452 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC29.15■■■□□ 2.26
COL1A1P02452 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL1A1P02452 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC29.15■■■□□ 2.26
COL1A1P02452 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
COL1A1P02452 PKM-203ENST00000389093 2279 ntTSL 5 BASIC29.14■■■□□ 2.26
COL1A1P02452 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
COL1A1P02452 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC29.14■■■□□ 2.25
COL1A1P02452 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC29.13■■■□□ 2.25
COL1A1P02452 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC29.13■■■□□ 2.25
COL1A1P02452 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
COL1A1P02452 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC29.13■■■□□ 2.25
COL1A1P02452 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC29.13■■■□□ 2.25
COL1A1P02452 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL1A1P02452 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC29.12■■■□□ 2.25
COL1A1P02452 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
COL1A1P02452 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
COL1A1P02452 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC29.11■■■□□ 2.25
COL1A1P02452 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC29.11■■■□□ 2.25
COL1A1P02452 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC29.11■■■□□ 2.25
COL1A1P02452 AC239859.2-201ENST00000444165 318 ntBASIC29.1■■■□□ 2.25
COL1A1P02452 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL1A1P02452 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL1A1P02452 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
COL1A1P02452 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL1A1P02452 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
COL1A1P02452 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL1A1P02452 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL1A1P02452 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC29.1■■■□□ 2.25
COL1A1P02452 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC29.1■■■□□ 2.25
COL1A1P02452 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC29.1■■■□□ 2.25
COL1A1P02452 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
COL1A1P02452 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC29.09■■■□□ 2.25
COL1A1P02452 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
COL1A1P02452 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
COL1A1P02452 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
COL1A1P02452 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
COL1A1P02452 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC29.08■■■□□ 2.25
COL1A1P02452 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
COL1A1P02452 CREM-229ENST00000474362 1030 ntTSL 2 BASIC29.07■■■□□ 2.24
COL1A1P02452 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
COL1A1P02452 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC29.07■■■□□ 2.24
COL1A1P02452 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL1A1P02452 KRT18P10-201ENST00000388836 1287 ntBASIC29.06■■■□□ 2.24
COL1A1P02452 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC29.06■■■□□ 2.24
COL1A1P02452 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC29.05■■■□□ 2.24
COL1A1P02452 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
COL1A1P02452 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC29.05■■■□□ 2.24
COL1A1P02452 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC29.05■■■□□ 2.24
COL1A1P02452 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC29.05■■■□□ 2.24
COL1A1P02452 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
COL1A1P02452 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC29.04■■■□□ 2.24
COL1A1P02452 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC29.04■■■□□ 2.24
COL1A1P02452 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
COL1A1P02452 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC29.04■■■□□ 2.24
COL1A1P02452 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC29.04■■■□□ 2.24
COL1A1P02452 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC29.04■■■□□ 2.24
COL1A1P02452 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC29.04■■■□□ 2.24
COL1A1P02452 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC29.03■■■□□ 2.24
COL1A1P02452 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
COL1A1P02452 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC29.03■■■□□ 2.24
COL1A1P02452 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
COL1A1P02452 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC29.03■■■□□ 2.24
COL1A1P02452 LSM7-203ENST00000585409 512 ntTSL 2 BASIC29.03■■■□□ 2.24
COL1A1P02452 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
COL1A1P02452 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
COL1A1P02452 GRAMD4P7-201ENST00000578182 1232 ntBASIC29.02■■■□□ 2.24
COL1A1P02452 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
COL1A1P02452 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
COL1A1P02452 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC29.01■■■□□ 2.23
COL1A1P02452 AC022616.5-201ENST00000518796 181 ntBASIC29.01■■■□□ 2.23
COL1A1P02452 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
COL1A1P02452 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC29■■■□□ 2.23
COL1A1P02452 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC29■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms