Protein–RNA interactions for Protein: O75841

UPK1B, Uroplakin-1b, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1BO75841 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
UPK1BO75841 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
UPK1BO75841 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UPK1BO75841 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
UPK1BO75841 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
UPK1BO75841 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UPK1BO75841 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UPK1BO75841 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
UPK1BO75841 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
UPK1BO75841 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
UPK1BO75841 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.89■□□□□ 0.93
UPK1BO75841 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UPK1BO75841 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UPK1BO75841 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UPK1BO75841 WHAMMP2-203ENST00000563942 1603 ntBASIC20.89■□□□□ 0.93
UPK1BO75841 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
UPK1BO75841 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
UPK1BO75841 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UPK1BO75841 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
UPK1BO75841 EP400NL-214ENST00000641289 2402 ntBASIC20.88■□□□□ 0.93
UPK1BO75841 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.88■□□□□ 0.93
UPK1BO75841 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.88■□□□□ 0.93
UPK1BO75841 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
UPK1BO75841 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK1BO75841 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.88■□□□□ 0.93
UPK1BO75841 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK1BO75841 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK1BO75841 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK1BO75841 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK1BO75841 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.88■□□□□ 0.93
UPK1BO75841 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.88■□□□□ 0.93
UPK1BO75841 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK1BO75841 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UPK1BO75841 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
UPK1BO75841 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UPK1BO75841 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.87■□□□□ 0.93
UPK1BO75841 AC135983.2-203ENST00000454486 1613 ntBASIC20.87■□□□□ 0.93
UPK1BO75841 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
UPK1BO75841 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
UPK1BO75841 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.87■□□□□ 0.93
UPK1BO75841 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.87■□□□□ 0.93
UPK1BO75841 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UPK1BO75841 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.86■□□□□ 0.93
UPK1BO75841 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
UPK1BO75841 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UPK1BO75841 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
UPK1BO75841 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
UPK1BO75841 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
UPK1BO75841 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UPK1BO75841 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
UPK1BO75841 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.85■□□□□ 0.93
UPK1BO75841 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
UPK1BO75841 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UPK1BO75841 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
UPK1BO75841 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UPK1BO75841 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UPK1BO75841 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
UPK1BO75841 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
UPK1BO75841 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UPK1BO75841 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UPK1BO75841 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UPK1BO75841 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UPK1BO75841 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UPK1BO75841 ABCB10P4-201ENST00000566803 2184 ntBASIC20.83■□□□□ 0.93
UPK1BO75841 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UPK1BO75841 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UPK1BO75841 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.83■□□□□ 0.93
UPK1BO75841 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UPK1BO75841 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
UPK1BO75841 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UPK1BO75841 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
UPK1BO75841 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UPK1BO75841 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UPK1BO75841 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.83■□□□□ 0.92
UPK1BO75841 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
UPK1BO75841 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
UPK1BO75841 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UPK1BO75841 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
UPK1BO75841 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UPK1BO75841 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UPK1BO75841 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.81■□□□□ 0.92
UPK1BO75841 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.81■□□□□ 0.92
UPK1BO75841 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
UPK1BO75841 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
UPK1BO75841 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC20.8■□□□□ 0.92
UPK1BO75841 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.8■□□□□ 0.92
UPK1BO75841 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
UPK1BO75841 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.8■□□□□ 0.92
UPK1BO75841 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UPK1BO75841 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
UPK1BO75841 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms