Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 AL035685.1-201ENST00000636663 812 ntBASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25.85■■□□□ 1.73
SMIM28A0A1B0GU29 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.84■■□□□ 1.73
SMIM28A0A1B0GU29 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
SMIM28A0A1B0GU29 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SMIM28A0A1B0GU29 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
SMIM28A0A1B0GU29 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC25.84■■□□□ 1.73
SMIM28A0A1B0GU29 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SMIM28A0A1B0GU29 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SMIM28A0A1B0GU29 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
SMIM28A0A1B0GU29 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.83■■□□□ 1.73
SMIM28A0A1B0GU29 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC25.83■■□□□ 1.72
SMIM28A0A1B0GU29 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
SMIM28A0A1B0GU29 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
SMIM28A0A1B0GU29 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.72
SMIM28A0A1B0GU29 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
SMIM28A0A1B0GU29 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
SMIM28A0A1B0GU29 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
SMIM28A0A1B0GU29 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.82■■□□□ 1.72
SMIM28A0A1B0GU29 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SMIM28A0A1B0GU29 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.82■■□□□ 1.72
SMIM28A0A1B0GU29 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SMIM28A0A1B0GU29 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SMIM28A0A1B0GU29 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
SMIM28A0A1B0GU29 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC25.81■■□□□ 1.72
SMIM28A0A1B0GU29 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SMIM28A0A1B0GU29 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMIM28A0A1B0GU29 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMIM28A0A1B0GU29 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMIM28A0A1B0GU29 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMIM28A0A1B0GU29 ERN1-208ENST00000606895 2068 ntBASIC25.79■■□□□ 1.72
SMIM28A0A1B0GU29 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SMIM28A0A1B0GU29 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
SMIM28A0A1B0GU29 AC009299.2-201ENST00000482477 511 ntBASIC25.79■■□□□ 1.72
SMIM28A0A1B0GU29 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SMIM28A0A1B0GU29 AL031848.2-201ENST00000607670 837 ntBASIC25.79■■□□□ 1.72
SMIM28A0A1B0GU29 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SMIM28A0A1B0GU29 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC25.78■■□□□ 1.72
SMIM28A0A1B0GU29 AC022616.5-201ENST00000518796 181 ntBASIC25.78■■□□□ 1.72
SMIM28A0A1B0GU29 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SMIM28A0A1B0GU29 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SMIM28A0A1B0GU29 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SMIM28A0A1B0GU29 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.78■■□□□ 1.72
SMIM28A0A1B0GU29 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
SMIM28A0A1B0GU29 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SMIM28A0A1B0GU29 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.77■■□□□ 1.72
SMIM28A0A1B0GU29 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.77■■□□□ 1.72
SMIM28A0A1B0GU29 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
SMIM28A0A1B0GU29 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SMIM28A0A1B0GU29 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC25.77■■□□□ 1.72
SMIM28A0A1B0GU29 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC25.77■■□□□ 1.72
SMIM28A0A1B0GU29 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.76■■□□□ 1.71
SMIM28A0A1B0GU29 PRTG-204ENST00000561292 833 ntTSL 3 BASIC25.76■■□□□ 1.71
SMIM28A0A1B0GU29 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC25.75■■□□□ 1.71
SMIM28A0A1B0GU29 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
SMIM28A0A1B0GU29 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
SMIM28A0A1B0GU29 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SMIM28A0A1B0GU29 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SMIM28A0A1B0GU29 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SMIM28A0A1B0GU29 AC096887.2-201ENST00000623443 1957 ntBASIC25.73■■□□□ 1.71
SMIM28A0A1B0GU29 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC25.73■■□□□ 1.71
SMIM28A0A1B0GU29 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC25.73■■□□□ 1.71
SMIM28A0A1B0GU29 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
SMIM28A0A1B0GU29 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
SMIM28A0A1B0GU29 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC25.72■■□□□ 1.71
SMIM28A0A1B0GU29 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SMIM28A0A1B0GU29 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC25.71■■□□□ 1.71
SMIM28A0A1B0GU29 TRIR-205ENST00000592273 783 ntTSL 3 BASIC25.71■■□□□ 1.71
SMIM28A0A1B0GU29 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
SMIM28A0A1B0GU29 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SMIM28A0A1B0GU29 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SMIM28A0A1B0GU29 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.71■■□□□ 1.71
SMIM28A0A1B0GU29 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.7■■□□□ 1.71
SMIM28A0A1B0GU29 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
SMIM28A0A1B0GU29 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMIM28A0A1B0GU29 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC25.7■■□□□ 1.7
SMIM28A0A1B0GU29 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
SMIM28A0A1B0GU29 TK2-216ENST00000564917 1156 ntTSL 3 BASIC25.7■■□□□ 1.7
SMIM28A0A1B0GU29 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMIM28A0A1B0GU29 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
SMIM28A0A1B0GU29 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
SMIM28A0A1B0GU29 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 AC092803.2-201ENST00000564287 1899 ntBASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
SMIM28A0A1B0GU29 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms