Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV3A0A0B4J244 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV3A0A0B4J244 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAV3A0A0B4J244 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV3A0A0B4J244 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV3A0A0B4J244 AC060814.1-201ENST00000554326 538 ntBASIC19.19■□□□□ 0.66
TRAV3A0A0B4J244 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV3A0A0B4J244 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV3A0A0B4J244 SLC6A10P-202ENST00000431994 2058 ntBASIC19.18■□□□□ 0.66
TRAV3A0A0B4J244 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV3A0A0B4J244 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV3A0A0B4J244 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV3A0A0B4J244 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV3A0A0B4J244 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAV3A0A0B4J244 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV3A0A0B4J244 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV3A0A0B4J244 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 AC025884.2-201ENST00000553429 711 ntBASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV3A0A0B4J244 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV3A0A0B4J244 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV3A0A0B4J244 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV3A0A0B4J244 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV3A0A0B4J244 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV3A0A0B4J244 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV3A0A0B4J244 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV3A0A0B4J244 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRAV3A0A0B4J244 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
TRAV3A0A0B4J244 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.14■□□□□ 0.65
TRAV3A0A0B4J244 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV3A0A0B4J244 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
TRAV3A0A0B4J244 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV3A0A0B4J244 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 SMPD5-203ENST00000639008 1464 ntBASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV3A0A0B4J244 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV3A0A0B4J244 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.12■□□□□ 0.65
TRAV3A0A0B4J244 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV3A0A0B4J244 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
TRAV3A0A0B4J244 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.12■□□□□ 0.65
TRAV3A0A0B4J244 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV3A0A0B4J244 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 MIR639-201ENST00000384974 98 ntBASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV3A0A0B4J244 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 MIR3960-201ENST00000583311 91 ntBASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 AC092296.2-201ENST00000589470 999 ntBASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
TRAV3A0A0B4J244 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 LINC01124-201ENST00000409786 2117 ntBASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV3A0A0B4J244 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms