Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
PCDH9Q9HC56 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 SNX33P1-201ENST00000592116 1762 ntBASIC17.28■□□□□ 0.36
PCDH9Q9HC56 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 AC026396.1-201ENST00000419388 421 ntBASIC17.28■□□□□ 0.36
PCDH9Q9HC56 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 PAWRP1-201ENST00000451083 565 ntBASIC17.28■□□□□ 0.36
PCDH9Q9HC56 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 AC092910.1-201ENST00000482027 1129 ntBASIC17.28■□□□□ 0.36
PCDH9Q9HC56 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
PCDH9Q9HC56 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 AC008741.2-201ENST00000612792 3115 ntBASIC17.27■□□□□ 0.36
PCDH9Q9HC56 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 RPS15P9-201ENST00000494093 319 ntBASIC17.27■□□□□ 0.36
PCDH9Q9HC56 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 PGM5P2-202ENST00000637225 1043 ntBASIC17.27■□□□□ 0.36
PCDH9Q9HC56 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.27■□□□□ 0.36
PCDH9Q9HC56 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
PCDH9Q9HC56 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
PCDH9Q9HC56 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms