Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP29Q9HBJ7 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 AC005593.1-201ENST00000624894 515 ntBASIC17.22■□□□□ 0.35
USP29Q9HBJ7 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 GGT3P-204ENST00000453783 1664 ntBASIC17.22■□□□□ 0.35
USP29Q9HBJ7 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
USP29Q9HBJ7 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 KRT8P39-201ENST00000396270 1433 ntBASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AC131009.4-201ENST00000624048 1740 ntBASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AC091167.2-201ENST00000579581 588 ntBASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AL691403.2-201ENST00000618460 490 ntBASIC17.21■□□□□ 0.35
USP29Q9HBJ7 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP29Q9HBJ7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.34
USP29Q9HBJ7 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.21■□□□□ 0.34
USP29Q9HBJ7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.21■□□□□ 0.34
USP29Q9HBJ7 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.21■□□□□ 0.34
USP29Q9HBJ7 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
USP29Q9HBJ7 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.21■□□□□ 0.34
USP29Q9HBJ7 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.2■□□□□ 0.34
USP29Q9HBJ7 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 AP002414.3-201ENST00000589352 1468 ntBASIC17.2■□□□□ 0.34
USP29Q9HBJ7 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.2■□□□□ 0.34
USP29Q9HBJ7 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.2■□□□□ 0.34
USP29Q9HBJ7 AC004832.2-201ENST00000426397 482 ntBASIC17.2■□□□□ 0.34
USP29Q9HBJ7 GPX1P2-201ENST00000429271 606 ntBASIC17.2■□□□□ 0.34
USP29Q9HBJ7 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.2■□□□□ 0.34
USP29Q9HBJ7 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms