Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC112907.2-201ENST00000448639 330 ntBASIC14.83□□□□□ -0.04
MMP28Q9H239 KRT18P38-201ENST00000449496 1282 ntBASIC14.83□□□□□ -0.04
MMP28Q9H239 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.83□□□□□ -0.04
MMP28Q9H239 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.83□□□□□ -0.04
MMP28Q9H239 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MMP28Q9H239 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.83□□□□□ -0.04
MMP28Q9H239 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MMP28Q9H239 AC024563.2-201ENST00000603282 481 ntBASIC14.83□□□□□ -0.04
MMP28Q9H239 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
MMP28Q9H239 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.83□□□□□ -0.04
MMP28Q9H239 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
MMP28Q9H239 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC14.83□□□□□ -0.04
MMP28Q9H239 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC14.83□□□□□ -0.04
MMP28Q9H239 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MMP28Q9H239 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MMP28Q9H239 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC14.83□□□□□ -0.04
MMP28Q9H239 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
MMP28Q9H239 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.83□□□□□ -0.04
MMP28Q9H239 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MMP28Q9H239 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.83□□□□□ -0.04
MMP28Q9H239 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MMP28Q9H239 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MMP28Q9H239 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.83□□□□□ -0.04
MMP28Q9H239 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
MMP28Q9H239 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
MMP28Q9H239 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
MMP28Q9H239 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
MMP28Q9H239 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.82□□□□□ -0.04
MMP28Q9H239 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
MMP28Q9H239 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
MMP28Q9H239 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
MMP28Q9H239 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.82□□□□□ -0.04
MMP28Q9H239 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.82□□□□□ -0.04
MMP28Q9H239 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC14.82□□□□□ -0.04
MMP28Q9H239 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.82□□□□□ -0.04
MMP28Q9H239 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.82□□□□□ -0.04
MMP28Q9H239 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.82□□□□□ -0.04
MMP28Q9H239 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.82□□□□□ -0.04
MMP28Q9H239 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
MMP28Q9H239 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.82□□□□□ -0.04
MMP28Q9H239 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.82□□□□□ -0.04
MMP28Q9H239 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.82□□□□□ -0.04
MMP28Q9H239 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
MMP28Q9H239 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.82□□□□□ -0.04
MMP28Q9H239 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 KRT89P-201ENST00000620027 1478 ntBASIC14.82□□□□□ -0.04
MMP28Q9H239 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC14.82□□□□□ -0.04
MMP28Q9H239 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
MMP28Q9H239 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
MMP28Q9H239 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
MMP28Q9H239 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.81□□□□□ -0.04
MMP28Q9H239 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.81□□□□□ -0.04
MMP28Q9H239 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 AC092597.1-201ENST00000487352 616 ntBASIC14.81□□□□□ -0.04
MMP28Q9H239 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 CD320-202ENST00000537716 1119 ntTSL 2 BASIC14.81□□□□□ -0.04
MMP28Q9H239 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms