Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 MIR3687-2-201ENST00000577708 61 ntBASIC16.82■□□□□ 0.28
TRIM4Q9C037 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 MIR3687-1-201ENST00000614492 61 ntBASIC16.82■□□□□ 0.28
TRIM4Q9C037 FAM215A-202ENST00000632077 792 ntBASIC16.82■□□□□ 0.28
TRIM4Q9C037 AC134684.3-201ENST00000641758 218 ntBASIC16.82■□□□□ 0.28
TRIM4Q9C037 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 LYSMD4-203ENST00000378904 2122 ntBASIC16.82■□□□□ 0.28
TRIM4Q9C037 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
TRIM4Q9C037 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.82■□□□□ 0.28
TRIM4Q9C037 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 AL591684.3-201ENST00000605187 298 ntBASIC16.81■□□□□ 0.28
TRIM4Q9C037 AC027601.4-201ENST00000611259 610 ntBASIC16.81■□□□□ 0.28
TRIM4Q9C037 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
TRIM4Q9C037 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
TRIM4Q9C037 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 AC024909.3-201ENST00000611513 2257 ntBASIC16.8■□□□□ 0.28
TRIM4Q9C037 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 SART3-203ENST00000546611 1184 ntBASIC16.8■□□□□ 0.28
TRIM4Q9C037 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
TRIM4Q9C037 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
TRIM4Q9C037 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms