Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NPAS1Q99742 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NPAS1Q99742 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.25■□□□□ 0.03
NPAS1Q99742 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 AL591424.1-201ENST00000442569 1213 ntBASIC15.25■□□□□ 0.03
NPAS1Q99742 RNA5SP416-201ENST00000516838 111 ntBASIC15.25■□□□□ 0.03
NPAS1Q99742 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NPAS1Q99742 KRT19P2-202ENST00000557173 1012 ntBASIC15.25■□□□□ 0.03
NPAS1Q99742 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.25■□□□□ 0.03
NPAS1Q99742 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NPAS1Q99742 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.25■□□□□ 0.03
NPAS1Q99742 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.25■□□□□ 0.03
NPAS1Q99742 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NPAS1Q99742 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.25■□□□□ 0.03
NPAS1Q99742 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NPAS1Q99742 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NPAS1Q99742 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NPAS1Q99742 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.25■□□□□ 0.03
NPAS1Q99742 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.25■□□□□ 0.03
NPAS1Q99742 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.25■□□□□ 0.03
NPAS1Q99742 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
NPAS1Q99742 AC092919.2-201ENST00000623631 1645 ntBASIC15.25■□□□□ 0.03
NPAS1Q99742 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.24■□□□□ 0.03
NPAS1Q99742 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
NPAS1Q99742 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
NPAS1Q99742 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.24■□□□□ 0.03
NPAS1Q99742 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.24■□□□□ 0.03
NPAS1Q99742 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 AL353732.1-201ENST00000569618 1459 ntBASIC15.24■□□□□ 0.03
NPAS1Q99742 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 LINC00895-201ENST00000629028 1637 ntBASIC15.24■□□□□ 0.03
NPAS1Q99742 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
NPAS1Q99742 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC15.24■□□□□ 0.03
NPAS1Q99742 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NPAS1Q99742 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
NPAS1Q99742 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.23■□□□□ 0.03
NPAS1Q99742 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.23■□□□□ 0.03
NPAS1Q99742 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.23■□□□□ 0.03
NPAS1Q99742 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.23■□□□□ 0.03
NPAS1Q99742 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.23■□□□□ 0.03
NPAS1Q99742 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NPAS1Q99742 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
NPAS1Q99742 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.23■□□□□ 0.03
NPAS1Q99742 HMGA1P7-201ENST00000406908 502 ntBASIC15.23■□□□□ 0.03
NPAS1Q99742 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.23■□□□□ 0.03
NPAS1Q99742 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.23■□□□□ 0.03
NPAS1Q99742 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
NPAS1Q99742 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NPAS1Q99742 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.23■□□□□ 0.03
NPAS1Q99742 AC005412.3-201ENST00000580309 715 ntBASIC15.23■□□□□ 0.03
NPAS1Q99742 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.23■□□□□ 0.03
NPAS1Q99742 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms