Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.38□□□□□ -0.11
COL12A1Q99715 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC14.38□□□□□ -0.11
COL12A1Q99715 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.38□□□□□ -0.11
COL12A1Q99715 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.38□□□□□ -0.11
COL12A1Q99715 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.38□□□□□ -0.11
COL12A1Q99715 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
COL12A1Q99715 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.38□□□□□ -0.11
COL12A1Q99715 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 KRT8P22-201ENST00000562317 1415 ntBASIC14.38□□□□□ -0.11
COL12A1Q99715 KRT8P12-202ENST00000472924 1397 ntBASIC14.38□□□□□ -0.11
COL12A1Q99715 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.38□□□□□ -0.11
COL12A1Q99715 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
COL12A1Q99715 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.38□□□□□ -0.11
COL12A1Q99715 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.38□□□□□ -0.11
COL12A1Q99715 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.38□□□□□ -0.11
COL12A1Q99715 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14.38□□□□□ -0.11
COL12A1Q99715 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 AC098818.2-201ENST00000564925 2320 ntBASIC14.38□□□□□ -0.11
COL12A1Q99715 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
COL12A1Q99715 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.37□□□□□ -0.11
COL12A1Q99715 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
COL12A1Q99715 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 RRP7BP-205ENST00000566851 833 ntBASIC14.37□□□□□ -0.11
COL12A1Q99715 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.37□□□□□ -0.11
COL12A1Q99715 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.37□□□□□ -0.11
COL12A1Q99715 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 RN7SL720P-201ENST00000488178 304 ntBASIC14.37□□□□□ -0.11
COL12A1Q99715 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
COL12A1Q99715 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.37□□□□□ -0.11
COL12A1Q99715 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC14.37□□□□□ -0.11
COL12A1Q99715 AL008638.5-201ENST00000623814 1298 ntBASIC14.37□□□□□ -0.11
COL12A1Q99715 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 CD276-203ENST00000537340 2439 ntTSL 2 BASIC14.37□□□□□ -0.11
COL12A1Q99715 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL12A1Q99715 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
COL12A1Q99715 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.36□□□□□ -0.11
COL12A1Q99715 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.36□□□□□ -0.11
COL12A1Q99715 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC14.36□□□□□ -0.11
COL12A1Q99715 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.36□□□□□ -0.11
COL12A1Q99715 AL022328.3-201ENST00000607943 679 ntBASIC14.36□□□□□ -0.11
COL12A1Q99715 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL12A1Q99715 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
COL12A1Q99715 AP000974.1-201ENST00000623909 2387 ntBASIC14.36□□□□□ -0.11
COL12A1Q99715 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms