Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS13AQ96RL7 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 AC138028.4-201ENST00000564984 1845 ntBASIC16.27■□□□□ 0.19
VPS13AQ96RL7 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.27■□□□□ 0.19
VPS13AQ96RL7 FAM86HP-204ENST00000513466 959 ntBASIC16.27■□□□□ 0.19
VPS13AQ96RL7 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 DUX4L45-201ENST00000566406 1057 ntBASIC16.27■□□□□ 0.19
VPS13AQ96RL7 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 AC128714.1-201ENST00000637035 887 ntBASIC16.27■□□□□ 0.19
VPS13AQ96RL7 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.27■□□□□ 0.19
VPS13AQ96RL7 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 EGFEM1P-202ENST00000431685 1563 ntBASIC16.26■□□□□ 0.19
VPS13AQ96RL7 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 RRP7BP-205ENST00000566851 833 ntBASIC16.26■□□□□ 0.19
VPS13AQ96RL7 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 AC016629.1-201ENST00000596579 586 ntBASIC16.26■□□□□ 0.19
VPS13AQ96RL7 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 AC079328.2-201ENST00000561241 3354 ntBASIC16.26■□□□□ 0.19
VPS13AQ96RL7 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VPS13AQ96RL7 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 MPRIPP1-201ENST00000452433 1089 ntBASIC16.25■□□□□ 0.19
VPS13AQ96RL7 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 AL391069.4-201ENST00000609583 481 ntBASIC16.25■□□□□ 0.19
VPS13AQ96RL7 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
VPS13AQ96RL7 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms