Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.51■□□□□ 0.55
HPS3Q969F9 HMGA1P7-201ENST00000406908 502 ntBASIC18.51■□□□□ 0.55
HPS3Q969F9 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.51■□□□□ 0.55
HPS3Q969F9 AL513480.1-201ENST00000451731 511 ntBASIC18.51■□□□□ 0.55
HPS3Q969F9 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.51■□□□□ 0.55
HPS3Q969F9 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.51■□□□□ 0.55
HPS3Q969F9 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.51■□□□□ 0.55
HPS3Q969F9 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HPS3Q969F9 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
HPS3Q969F9 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HPS3Q969F9 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.51■□□□□ 0.55
HPS3Q969F9 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HPS3Q969F9 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
HPS3Q969F9 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.51■□□□□ 0.55
HPS3Q969F9 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.51■□□□□ 0.55
HPS3Q969F9 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HPS3Q969F9 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.5■□□□□ 0.55
HPS3Q969F9 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 AC012569.1-201ENST00000591191 1524 ntBASIC18.5■□□□□ 0.55
HPS3Q969F9 ME2P1-201ENST00000426028 1970 ntBASIC18.5■□□□□ 0.55
HPS3Q969F9 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.5■□□□□ 0.55
HPS3Q969F9 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
HPS3Q969F9 AC145285.3-201ENST00000564603 959 ntBASIC18.5■□□□□ 0.55
HPS3Q969F9 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.5■□□□□ 0.55
HPS3Q969F9 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.5■□□□□ 0.55
HPS3Q969F9 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HPS3Q969F9 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HPS3Q969F9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HPS3Q969F9 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.49■□□□□ 0.55
HPS3Q969F9 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.49■□□□□ 0.55
HPS3Q969F9 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
HPS3Q969F9 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.49■□□□□ 0.55
HPS3Q969F9 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.49■□□□□ 0.55
HPS3Q969F9 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.49■□□□□ 0.55
HPS3Q969F9 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.49■□□□□ 0.55
HPS3Q969F9 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HPS3Q969F9 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 AC120114.3-201ENST00000611923 658 ntBASIC18.49■□□□□ 0.55
HPS3Q969F9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.49■□□□□ 0.55
HPS3Q969F9 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HPS3Q969F9 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.49■□□□□ 0.55
HPS3Q969F9 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
HPS3Q969F9 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
HPS3Q969F9 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms