Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 AC026396.1-201ENST00000419388 421 ntBASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 AC096734.2-201ENST00000562054 433 ntBASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 AC034105.1-201ENST00000563488 319 ntBASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 GGT3P-204ENST00000453783 1664 ntBASIC18.54■□□□□ 0.56
CCDC65Q8IXS2 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 AL031731.1-201ENST00000642131 2094 ntBASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 AL031432.2-201ENST00000566714 459 ntBASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 AL928711.1-201ENST00000570165 459 ntBASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 AC010507.1-201ENST00000633895 436 ntBASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 ALOX12P2-203ENST00000570921 1945 ntBASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC65Q8IXS2 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC65Q8IXS2 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms