Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 SPCS2P1-201ENST00000561636 679 ntBASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
UBE3BQ7Z3V4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 SPDYE7P-202ENST00000420373 878 ntBASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 AC107890.1-201ENST00000422478 521 ntBASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 DUT-210ENST00000559935 569 ntTSL 3 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 AC011467.4-201ENST00000594891 528 ntBASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 AL031731.1-201ENST00000642131 2094 ntBASIC20.73■□□□□ 0.91
UBE3BQ7Z3V4 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 MIR943-201ENST00000401286 94 ntBASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 RARRES2P9-201ENST00000565168 469 ntBASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 MIR4453-201ENST00000584019 89 ntBASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 AP3S2-216ENST00000617003 1561 ntBASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 AC080080.1-201ENST00000625121 2420 ntBASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.72■□□□□ 0.91
UBE3BQ7Z3V4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms