Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNFT1Q5M7Z0 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
RNFT1Q5M7Z0 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
RNFT1Q5M7Z0 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 AC003101.2-201ENST00000612557 442 ntBASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 AC060834.1-201ENST00000443027 2032 ntBASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 AL645728.1-201ENST00000366221 2101 ntBASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
RNFT1Q5M7Z0 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 AC002472.2-201ENST00000442739 958 ntBASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 SERPINA7P1-201ENST00000443077 631 ntBASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.97□□□□□ -0.01
RNFT1Q5M7Z0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
RNFT1Q5M7Z0 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms