Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 SLC25A6P2-201ENST00000497974 877 ntBASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 AC011467.4-201ENST00000594891 528 ntBASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 AC026691.1-201ENST00000602502 2017 ntBASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC144BQ3MJ40 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC144BQ3MJ40 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.39■□□□□ 0.7
CCDC144BQ3MJ40 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.39■□□□□ 0.7
CCDC144BQ3MJ40 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC144BQ3MJ40 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
CCDC144BQ3MJ40 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.39■□□□□ 0.7
CCDC144BQ3MJ40 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC144BQ3MJ40 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 HLA-J-203ENST00000494367 1087 ntBASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC144BQ3MJ40 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 SLC25A1P3-201ENST00000395415 828 ntBASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 AC087163.2-201ENST00000457299 853 ntBASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 AC112191.1-201ENST00000523689 701 ntBASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 AC006449.5-201ENST00000610658 2098 ntBASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 AC093512.1-201ENST00000617969 520 ntBASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CCDC144BQ3MJ40 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC144BQ3MJ40 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC144BQ3MJ40 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC144BQ3MJ40 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms