Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.36■□□□□ 0.69
SF3A1Q15459 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC19.35■□□□□ 0.69
SF3A1Q15459 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.35■□□□□ 0.69
SF3A1Q15459 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 PAWRP1-201ENST00000451083 565 ntBASIC19.35■□□□□ 0.69
SF3A1Q15459 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.35■□□□□ 0.69
SF3A1Q15459 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.35■□□□□ 0.69
SF3A1Q15459 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.35■□□□□ 0.69
SF3A1Q15459 AC021087.4-201ENST00000563761 564 ntBASIC19.35■□□□□ 0.69
SF3A1Q15459 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
SF3A1Q15459 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC19.35■□□□□ 0.69
SF3A1Q15459 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
SF3A1Q15459 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SF3A1Q15459 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SF3A1Q15459 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SF3A1Q15459 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SF3A1Q15459 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.34■□□□□ 0.69
SF3A1Q15459 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.34■□□□□ 0.69
SF3A1Q15459 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC19.34■□□□□ 0.69
SF3A1Q15459 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SF3A1Q15459 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SF3A1Q15459 ALOX12P2-203ENST00000570921 1945 ntBASIC19.34■□□□□ 0.69
SF3A1Q15459 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SF3A1Q15459 PTCHD3P3-201ENST00000403073 906 ntBASIC19.34■□□□□ 0.69
SF3A1Q15459 SCARNA2-201ENST00000458748 420 ntBASIC19.34■□□□□ 0.69
SF3A1Q15459 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.34■□□□□ 0.69
SF3A1Q15459 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.34■□□□□ 0.69
SF3A1Q15459 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SF3A1Q15459 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.34■□□□□ 0.69
SF3A1Q15459 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.34■□□□□ 0.69
SF3A1Q15459 IFNL4P1-201ENST00000607083 540 ntBASIC19.34■□□□□ 0.69
SF3A1Q15459 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.34■□□□□ 0.69
SF3A1Q15459 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SF3A1Q15459 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SF3A1Q15459 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SF3A1Q15459 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SF3A1Q15459 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SF3A1Q15459 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.34■□□□□ 0.69
SF3A1Q15459 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SF3A1Q15459 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SF3A1Q15459 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SF3A1Q15459 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC19.34■□□□□ 0.69
SF3A1Q15459 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SF3A1Q15459 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SF3A1Q15459 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SF3A1Q15459 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SF3A1Q15459 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SF3A1Q15459 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SF3A1Q15459 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SF3A1Q15459 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SF3A1Q15459 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SF3A1Q15459 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SF3A1Q15459 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SF3A1Q15459 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.33■□□□□ 0.68
SF3A1Q15459 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.33■□□□□ 0.68
SF3A1Q15459 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.33■□□□□ 0.68
SF3A1Q15459 UNC93B7-201ENST00000509439 705 ntBASIC19.33■□□□□ 0.68
SF3A1Q15459 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.33■□□□□ 0.68
SF3A1Q15459 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.33■□□□□ 0.68
SF3A1Q15459 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.33■□□□□ 0.68
SF3A1Q15459 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SF3A1Q15459 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.32■□□□□ 0.68
SF3A1Q15459 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SF3A1Q15459 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 AC006504.4-201ENST00000592118 1568 ntBASIC19.32■□□□□ 0.68
SF3A1Q15459 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC19.32■□□□□ 0.68
SF3A1Q15459 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SF3A1Q15459 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms