Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXA1P49639 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
HOXA1P49639 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXA1P49639 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXA1P49639 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXA1P49639 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXA1P49639 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
HOXA1P49639 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
HOXA1P49639 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.96□□□□□ -0.18
HOXA1P49639 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.95□□□□□ -0.18
HOXA1P49639 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.95□□□□□ -0.18
HOXA1P49639 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXA1P49639 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 AC026748.1-201ENST00000624349 3251 ntBASIC13.95□□□□□ -0.18
HOXA1P49639 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
HOXA1P49639 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXA1P49639 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 COPE-203ENST00000351079 907 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 AC068472.1-201ENST00000474589 881 ntBASIC13.95□□□□□ -0.18
HOXA1P49639 AC092597.1-201ENST00000487352 616 ntBASIC13.95□□□□□ -0.18
HOXA1P49639 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 AC010203.1-204ENST00000548782 407 ntBASIC13.95□□□□□ -0.18
HOXA1P49639 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC13.95□□□□□ -0.18
HOXA1P49639 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HOXA1P49639 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXA1P49639 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXA1P49639 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
HOXA1P49639 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
HOXA1P49639 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXA1P49639 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
HOXA1P49639 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HOXA1P49639 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
HOXA1P49639 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HOXA1P49639 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXA1P49639 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.94□□□□□ -0.18
HOXA1P49639 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
HOXA1P49639 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.94□□□□□ -0.18
HOXA1P49639 AC087499.1-201ENST00000418141 1075 ntBASIC13.94□□□□□ -0.18
HOXA1P49639 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
HOXA1P49639 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.94□□□□□ -0.18
HOXA1P49639 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 AC079328.2-201ENST00000561241 3354 ntBASIC13.94□□□□□ -0.18
HOXA1P49639 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXA1P49639 FGF14-AS2-201ENST00000606448 1074 ntBASIC13.94□□□□□ -0.18
HOXA1P49639 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
HOXA1P49639 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.94□□□□□ -0.18
HOXA1P49639 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
HOXA1P49639 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
HOXA1P49639 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
HOXA1P49639 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms