Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.77■□□□□ 0.12
RFX3P48380 AC018712.1-201ENST00000455767 687 ntBASIC15.77■□□□□ 0.12
RFX3P48380 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC15.77■□□□□ 0.12
RFX3P48380 AC012640.2-201ENST00000561606 901 ntBASIC15.77■□□□□ 0.12
RFX3P48380 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.77■□□□□ 0.12
RFX3P48380 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.77■□□□□ 0.12
RFX3P48380 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.77■□□□□ 0.12
RFX3P48380 AL773604.1-201ENST00000617417 272 ntBASIC15.77■□□□□ 0.12
RFX3P48380 AC008735.5-201ENST00000623544 497 ntBASIC15.77■□□□□ 0.12
RFX3P48380 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
RFX3P48380 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.77■□□□□ 0.11
RFX3P48380 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
RFX3P48380 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.77■□□□□ 0.11
RFX3P48380 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.77■□□□□ 0.11
RFX3P48380 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.77■□□□□ 0.11
RFX3P48380 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.77■□□□□ 0.11
RFX3P48380 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RFX3P48380 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
RFX3P48380 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
RFX3P48380 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC15.76■□□□□ 0.11
RFX3P48380 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
RFX3P48380 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.76■□□□□ 0.11
RFX3P48380 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
RFX3P48380 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.76■□□□□ 0.11
RFX3P48380 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
RFX3P48380 MRPL3P1-201ENST00000400109 1033 ntBASIC15.76■□□□□ 0.11
RFX3P48380 AC079776.4-201ENST00000511039 504 ntBASIC15.76■□□□□ 0.11
RFX3P48380 AC136632.2-201ENST00000512891 861 ntBASIC15.76■□□□□ 0.11
RFX3P48380 AC105339.3-201ENST00000560043 636 ntBASIC15.76■□□□□ 0.11
RFX3P48380 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.76■□□□□ 0.11
RFX3P48380 AL049840.3-201ENST00000602669 611 ntBASIC15.76■□□□□ 0.11
RFX3P48380 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
RFX3P48380 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.76■□□□□ 0.11
RFX3P48380 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RFX3P48380 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.76■□□□□ 0.11
RFX3P48380 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
RFX3P48380 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.76■□□□□ 0.11
RFX3P48380 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.76■□□□□ 0.11
RFX3P48380 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RFX3P48380 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.76■□□□□ 0.11
RFX3P48380 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
RFX3P48380 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.75■□□□□ 0.11
RFX3P48380 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.75■□□□□ 0.11
RFX3P48380 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RFX3P48380 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
RFX3P48380 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RFX3P48380 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 UBALD1-205ENST00000590891 2641 ntBASIC15.75■□□□□ 0.11
RFX3P48380 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.75■□□□□ 0.11
RFX3P48380 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.75■□□□□ 0.11
RFX3P48380 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.75■□□□□ 0.11
RFX3P48380 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 AL031284.1-201ENST00000419297 478 ntBASIC15.75■□□□□ 0.11
RFX3P48380 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 AC009078.2-202ENST00000463353 338 ntBASIC15.75■□□□□ 0.11
RFX3P48380 RPS15P9-201ENST00000494093 319 ntBASIC15.75■□□□□ 0.11
RFX3P48380 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RFX3P48380 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC15.75■□□□□ 0.11
RFX3P48380 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
RFX3P48380 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.75■□□□□ 0.11
RFX3P48380 AL356488.2-201ENST00000602755 427 ntBASIC15.75■□□□□ 0.11
RFX3P48380 AC104692.2-201ENST00000603054 253 ntBASIC15.75■□□□□ 0.11
RFX3P48380 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms