Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HBZP1-201ENST00000354915 429 ntBASIC16.02■□□□□ 0.16
MSX2P35548 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.02■□□□□ 0.16
MSX2P35548 HLA-J-202ENST00000469281 1241 ntBASIC16.02■□□□□ 0.16
MSX2P35548 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 AC010203.1-204ENST00000548782 407 ntBASIC16.02■□□□□ 0.16
MSX2P35548 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.02■□□□□ 0.16
MSX2P35548 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
MSX2P35548 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.02■□□□□ 0.15
MSX2P35548 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.02■□□□□ 0.15
MSX2P35548 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
MSX2P35548 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
MSX2P35548 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.02■□□□□ 0.15
MSX2P35548 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.02■□□□□ 0.15
MSX2P35548 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSX2P35548 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSX2P35548 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSX2P35548 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.02■□□□□ 0.15
MSX2P35548 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.02■□□□□ 0.15
MSX2P35548 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSX2P35548 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
MSX2P35548 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
MSX2P35548 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.01■□□□□ 0.15
MSX2P35548 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
MSX2P35548 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
MSX2P35548 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.01■□□□□ 0.15
MSX2P35548 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.01■□□□□ 0.15
MSX2P35548 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
MSX2P35548 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.01■□□□□ 0.15
MSX2P35548 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.01■□□□□ 0.15
MSX2P35548 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.01■□□□□ 0.15
MSX2P35548 FAM220CP-201ENST00000395253 831 ntBASIC16.01■□□□□ 0.15
MSX2P35548 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.01■□□□□ 0.15
MSX2P35548 KRT18P38-201ENST00000449496 1282 ntBASIC16.01■□□□□ 0.15
MSX2P35548 AL031432.5-201ENST00000641059 760 ntBASIC16.01■□□□□ 0.15
MSX2P35548 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
MSX2P35548 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
MSX2P35548 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 AL671710.1-201ENST00000610245 2349 ntBASIC16.01■□□□□ 0.15
MSX2P35548 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
MSX2P35548 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16■□□□□ 0.15
MSX2P35548 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
MSX2P35548 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16■□□□□ 0.15
MSX2P35548 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16■□□□□ 0.15
MSX2P35548 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16■□□□□ 0.15
MSX2P35548 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
MSX2P35548 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16■□□□□ 0.15
MSX2P35548 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16■□□□□ 0.15
MSX2P35548 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16■□□□□ 0.15
MSX2P35548 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16■□□□□ 0.15
MSX2P35548 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
MSX2P35548 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16■□□□□ 0.15
MSX2P35548 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16■□□□□ 0.15
MSX2P35548 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 MIR4497-201ENST00000583208 89 ntBASIC16■□□□□ 0.15
MSX2P35548 AC139887.4-201ENST00000607877 719 ntBASIC16■□□□□ 0.15
MSX2P35548 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
MSX2P35548 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16■□□□□ 0.15
MSX2P35548 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16■□□□□ 0.15
MSX2P35548 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
MSX2P35548 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16■□□□□ 0.15
MSX2P35548 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16■□□□□ 0.15
MSX2P35548 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms