Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 AC233724.13-201ENST00000598383 410 ntBASIC19.71■□□□□ 0.75
COL4A5P29400 AC026979.3-201ENST00000607315 403 ntBASIC19.71■□□□□ 0.75
COL4A5P29400 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
COL4A5P29400 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A5P29400 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A5P29400 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.71■□□□□ 0.75
COL4A5P29400 BOLA2P3-201ENST00000404566 256 ntBASIC19.71■□□□□ 0.75
COL4A5P29400 AC004945.1-201ENST00000416738 983 ntBASIC19.71■□□□□ 0.75
COL4A5P29400 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A5P29400 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC19.71■□□□□ 0.75
COL4A5P29400 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A5P29400 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A5P29400 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A5P29400 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19.71■□□□□ 0.75
COL4A5P29400 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 AL031731.1-201ENST00000642131 2094 ntBASIC19.71■□□□□ 0.75
COL4A5P29400 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A5P29400 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
COL4A5P29400 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A5P29400 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A5P29400 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL4A5P29400 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A5P29400 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.7■□□□□ 0.74
COL4A5P29400 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
COL4A5P29400 PFAS-212ENST00000625942 396 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A5P29400 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A5P29400 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL4A5P29400 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.7■□□□□ 0.74
COL4A5P29400 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.7■□□□□ 0.74
COL4A5P29400 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
COL4A5P29400 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC19.7■□□□□ 0.74
COL4A5P29400 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL4A5P29400 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A5P29400 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A5P29400 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A5P29400 STX1A-203ENST00000395155 783 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A5P29400 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 AL355994.2-201ENST00000447882 704 ntBASIC19.69■□□□□ 0.74
COL4A5P29400 AC108725.1-201ENST00000495472 409 ntBASIC19.69■□□□□ 0.74
COL4A5P29400 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.69■□□□□ 0.74
COL4A5P29400 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.69■□□□□ 0.74
COL4A5P29400 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A5P29400 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.69■□□□□ 0.74
COL4A5P29400 IGHV3OR16-16-201ENST00000563644 343 ntBASIC19.69■□□□□ 0.74
COL4A5P29400 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
COL4A5P29400 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL4A5P29400 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.69■□□□□ 0.74
COL4A5P29400 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
COL4A5P29400 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
COL4A5P29400 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL4A5P29400 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A5P29400 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A5P29400 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A5P29400 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A5P29400 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A5P29400 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms