Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.59■□□□□ 0.41
BDNFP23560 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
BDNFP23560 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.58■□□□□ 0.41
BDNFP23560 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
BDNFP23560 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
BDNFP23560 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
BDNFP23560 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.58■□□□□ 0.41
BDNFP23560 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BDNFP23560 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BDNFP23560 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
BDNFP23560 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BDNFP23560 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.58■□□□□ 0.41
BDNFP23560 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.58■□□□□ 0.41
BDNFP23560 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BDNFP23560 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.58■□□□□ 0.4
BDNFP23560 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.58■□□□□ 0.4
BDNFP23560 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.58■□□□□ 0.4
BDNFP23560 FAM58DP-201ENST00000428076 619 ntBASIC17.58■□□□□ 0.4
BDNFP23560 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.58■□□□□ 0.4
BDNFP23560 LINC01225-203ENST00000563550 1244 ntBASIC17.58■□□□□ 0.4
BDNFP23560 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.58■□□□□ 0.4
BDNFP23560 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
BDNFP23560 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
BDNFP23560 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.58■□□□□ 0.4
BDNFP23560 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BDNFP23560 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
BDNFP23560 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 UXT-AS1-201ENST00000590504 1525 ntBASIC17.57■□□□□ 0.4
BDNFP23560 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.57■□□□□ 0.4
BDNFP23560 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
BDNFP23560 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.57■□□□□ 0.4
BDNFP23560 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
BDNFP23560 RNF216P1-203ENST00000404404 2427 ntBASIC17.57■□□□□ 0.4
BDNFP23560 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.57■□□□□ 0.4
BDNFP23560 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.57■□□□□ 0.4
BDNFP23560 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.57■□□□□ 0.4
BDNFP23560 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
BDNFP23560 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 AL138918.1-201ENST00000568306 659 ntBASIC17.57■□□□□ 0.4
BDNFP23560 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.57■□□□□ 0.4
BDNFP23560 AC027796.2-201ENST00000575326 344 ntBASIC17.57■□□□□ 0.4
BDNFP23560 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.57■□□□□ 0.4
BDNFP23560 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.57■□□□□ 0.4
BDNFP23560 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.57■□□□□ 0.4
BDNFP23560 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
BDNFP23560 AC093028.1-201ENST00000622998 982 ntBASIC17.57■□□□□ 0.4
BDNFP23560 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.57■□□□□ 0.4
BDNFP23560 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
BDNFP23560 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.57■□□□□ 0.4
BDNFP23560 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.57■□□□□ 0.4
BDNFP23560 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BDNFP23560 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.57■□□□□ 0.4
BDNFP23560 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.56■□□□□ 0.4
BDNFP23560 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.56■□□□□ 0.4
BDNFP23560 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
BDNFP23560 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.56■□□□□ 0.4
BDNFP23560 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
BDNFP23560 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
BDNFP23560 AL512652.2-201ENST00000625156 1716 ntBASIC17.56■□□□□ 0.4
BDNFP23560 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 KRT18P32-201ENST00000424695 1287 ntBASIC17.56■□□□□ 0.4
BDNFP23560 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.56■□□□□ 0.4
BDNFP23560 KRT18P34-201ENST00000488218 1270 ntBASIC17.56■□□□□ 0.4
BDNFP23560 HLA-J-203ENST00000494367 1087 ntBASIC17.56■□□□□ 0.4
BDNFP23560 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.56■□□□□ 0.4
BDNFP23560 AC109322.1-201ENST00000524499 1264 ntBASIC17.56■□□□□ 0.4
BDNFP23560 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.56■□□□□ 0.4
BDNFP23560 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.56■□□□□ 0.4
BDNFP23560 AC004449.1-201ENST00000564240 433 ntBASIC17.56■□□□□ 0.4
BDNFP23560 AC027307.2-201ENST00000591252 911 ntBASIC17.56■□□□□ 0.4
BDNFP23560 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.56■□□□□ 0.4
BDNFP23560 AC009093.7-201ENST00000623853 1223 ntBASIC17.56■□□□□ 0.4
BDNFP23560 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.56■□□□□ 0.4
BDNFP23560 AL139011.1-202ENST00000642063 584 ntBASIC17.56■□□□□ 0.4
BDNFP23560 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms