Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.65■□□□□ 0.26
MSH3P20585 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.65■□□□□ 0.26
MSH3P20585 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.65■□□□□ 0.26
MSH3P20585 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
MSH3P20585 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.65■□□□□ 0.26
MSH3P20585 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 MIR4515-201ENST00000584082 81 ntBASIC16.65■□□□□ 0.26
MSH3P20585 AL645728.2-201ENST00000641974 660 ntBASIC16.65■□□□□ 0.26
MSH3P20585 AC006277.1-201ENST00000624348 1610 ntBASIC16.65■□□□□ 0.26
MSH3P20585 LINC00895-201ENST00000629028 1637 ntBASIC16.65■□□□□ 0.26
MSH3P20585 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.65■□□□□ 0.26
MSH3P20585 SLC22A20-204ENST00000530038 1673 ntBASIC16.65■□□□□ 0.26
MSH3P20585 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.65■□□□□ 0.26
MSH3P20585 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
MSH3P20585 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.65■□□□□ 0.26
MSH3P20585 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
MSH3P20585 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
MSH3P20585 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
MSH3P20585 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.64■□□□□ 0.26
MSH3P20585 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
MSH3P20585 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
MSH3P20585 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.64■□□□□ 0.25
MSH3P20585 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
MSH3P20585 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.64■□□□□ 0.25
MSH3P20585 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.64■□□□□ 0.25
MSH3P20585 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.64■□□□□ 0.25
MSH3P20585 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.64■□□□□ 0.25
MSH3P20585 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
MSH3P20585 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
MSH3P20585 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.64■□□□□ 0.25
MSH3P20585 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.64■□□□□ 0.25
MSH3P20585 AC013467.2-201ENST00000605472 835 ntBASIC16.64■□□□□ 0.25
MSH3P20585 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.64■□□□□ 0.25
MSH3P20585 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
MSH3P20585 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.64■□□□□ 0.25
MSH3P20585 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
MSH3P20585 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
MSH3P20585 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 PMS2P7-201ENST00000506558 1336 ntBASIC16.64■□□□□ 0.25
MSH3P20585 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
MSH3P20585 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
MSH3P20585 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
MSH3P20585 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
MSH3P20585 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
MSH3P20585 AC025580.3-201ENST00000617932 1424 ntBASIC16.63■□□□□ 0.25
MSH3P20585 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.63■□□□□ 0.25
MSH3P20585 AL645728.1-201ENST00000366221 2101 ntBASIC16.63■□□□□ 0.25
MSH3P20585 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MSH3P20585 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 AC008894.3-201ENST00000624324 3103 ntBASIC16.63■□□□□ 0.25
MSH3P20585 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.63■□□□□ 0.25
MSH3P20585 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSH3P20585 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms