Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.15■□□□□ 0.82
COL4A1P02462 AC116165.1-201ENST00000611806 668 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.15■□□□□ 0.82
COL4A1P02462 AL136982.4-201ENST00000437689 1740 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 CU639417.3-201ENST00000624240 1404 ntBASIC20.15■□□□□ 0.82
COL4A1P02462 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
COL4A1P02462 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL4A1P02462 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL4A1P02462 SLC7A15P-201ENST00000424028 1363 ntBASIC20.14■□□□□ 0.82
COL4A1P02462 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL4A1P02462 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL4A1P02462 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
COL4A1P02462 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
COL4A1P02462 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.14■□□□□ 0.81
COL4A1P02462 CR383656.12-201ENST00000549567 513 ntBASIC20.14■□□□□ 0.81
COL4A1P02462 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.14■□□□□ 0.81
COL4A1P02462 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
COL4A1P02462 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL4A1P02462 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 HLA-A-202ENST00000376806 1854 ntBASIC20.14■□□□□ 0.81
COL4A1P02462 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.14■□□□□ 0.81
COL4A1P02462 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.14■□□□□ 0.81
COL4A1P02462 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.14■□□□□ 0.81
COL4A1P02462 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.14■□□□□ 0.81
COL4A1P02462 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC20.14■□□□□ 0.81
COL4A1P02462 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL4A1P02462 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A1P02462 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.13■□□□□ 0.81
COL4A1P02462 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC20.13■□□□□ 0.81
COL4A1P02462 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A1P02462 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.13■□□□□ 0.81
COL4A1P02462 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.13■□□□□ 0.81
COL4A1P02462 AC004461.2-201ENST00000629517 803 ntBASIC20.13■□□□□ 0.81
COL4A1P02462 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A1P02462 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A1P02462 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A1P02462 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 AC007541.1-201ENST00000570282 1469 ntBASIC20.13■□□□□ 0.81
COL4A1P02462 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.13■□□□□ 0.81
COL4A1P02462 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A1P02462 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
COL4A1P02462 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A1P02462 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.13■□□□□ 0.81
COL4A1P02462 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.13■□□□□ 0.81
COL4A1P02462 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.13■□□□□ 0.81
COL4A1P02462 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
COL4A1P02462 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL4A1P02462 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL4A1P02462 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 GGT3P-204ENST00000453783 1664 ntBASIC20.12■□□□□ 0.81
COL4A1P02462 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 AC105020.1-201ENST00000435356 2205 ntBASIC20.12■□□□□ 0.81
COL4A1P02462 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
COL4A1P02462 UBALD1-205ENST00000590891 2641 ntBASIC20.12■□□□□ 0.81
COL4A1P02462 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.12■□□□□ 0.81
COL4A1P02462 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.12■□□□□ 0.81
COL4A1P02462 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.12■□□□□ 0.81
COL4A1P02462 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL4A1P02462 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC20.12■□□□□ 0.81
COL4A1P02462 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms