Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
TNFP01375 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.27■□□□□ 0.19
TNFP01375 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.19
TNFP01375 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TNFP01375 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TNFP01375 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.26■□□□□ 0.19
TNFP01375 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.26■□□□□ 0.19
TNFP01375 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TNFP01375 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TNFP01375 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TNFP01375 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.26■□□□□ 0.19
TNFP01375 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TNFP01375 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
TNFP01375 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.26■□□□□ 0.19
TNFP01375 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.26■□□□□ 0.19
TNFP01375 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.26■□□□□ 0.19
TNFP01375 AC093214.1-201ENST00000511688 1107 ntBASIC16.26■□□□□ 0.19
TNFP01375 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.26■□□□□ 0.19
TNFP01375 AC140878.1-201ENST00000565277 250 ntBASIC16.26■□□□□ 0.19
TNFP01375 MIR3197-201ENST00000582241 73 ntBASIC16.26■□□□□ 0.19
TNFP01375 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.26■□□□□ 0.19
TNFP01375 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TNFP01375 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.26■□□□□ 0.19
TNFP01375 AL096865.1-201ENST00000606796 927 ntBASIC16.26■□□□□ 0.19
TNFP01375 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.26■□□□□ 0.19
TNFP01375 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.26■□□□□ 0.19
TNFP01375 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 SNX33P1-201ENST00000592116 1762 ntBASIC16.26■□□□□ 0.19
TNFP01375 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
TNFP01375 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TNFP01375 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.25■□□□□ 0.19
TNFP01375 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TNFP01375 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TNFP01375 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TNFP01375 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TNFP01375 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.25■□□□□ 0.19
TNFP01375 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.25■□□□□ 0.19
TNFP01375 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.25■□□□□ 0.19
TNFP01375 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.25■□□□□ 0.19
TNFP01375 AC142381.1-201ENST00000426099 345 ntBASIC16.25■□□□□ 0.19
TNFP01375 AC055876.3-201ENST00000431496 288 ntBASIC16.25■□□□□ 0.19
TNFP01375 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.25■□□□□ 0.19
TNFP01375 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.25■□□□□ 0.19
TNFP01375 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.25■□□□□ 0.19
TNFP01375 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TNFP01375 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.25■□□□□ 0.19
TNFP01375 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.25■□□□□ 0.19
TNFP01375 LINC02084-201ENST00000606069 1096 ntBASIC16.25■□□□□ 0.19
TNFP01375 AC138649.4-201ENST00000612222 287 ntBASIC16.25■□□□□ 0.19
TNFP01375 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.25■□□□□ 0.19
TNFP01375 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
TNFP01375 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.25■□□□□ 0.19
TNFP01375 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 AP3S2-216ENST00000617003 1561 ntBASIC16.25■□□□□ 0.19
TNFP01375 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.25■□□□□ 0.19
TNFP01375 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TNFP01375 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.25■□□□□ 0.19
TNFP01375 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms