Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.23■□□□□ 0.19
LDLRP01130 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.23■□□□□ 0.19
LDLRP01130 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.23■□□□□ 0.19
LDLRP01130 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
LDLRP01130 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LDLRP01130 YBX2P1-201ENST00000394192 760 ntBASIC16.23■□□□□ 0.19
LDLRP01130 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LDLRP01130 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.23■□□□□ 0.19
LDLRP01130 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.23■□□□□ 0.19
LDLRP01130 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.23■□□□□ 0.19
LDLRP01130 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.23■□□□□ 0.19
LDLRP01130 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
LDLRP01130 AC004967.1-201ENST00000453589 447 ntBASIC16.23■□□□□ 0.19
LDLRP01130 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.23■□□□□ 0.19
LDLRP01130 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.23■□□□□ 0.19
LDLRP01130 MIR3687-2-201ENST00000577708 61 ntBASIC16.23■□□□□ 0.19
LDLRP01130 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.23■□□□□ 0.19
LDLRP01130 MTDHP3-201ENST00000594186 672 ntBASIC16.23■□□□□ 0.19
LDLRP01130 MIR3687-1-201ENST00000614492 61 ntBASIC16.23■□□□□ 0.19
LDLRP01130 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.23■□□□□ 0.19
LDLRP01130 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
LDLRP01130 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LDLRP01130 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.22■□□□□ 0.19
LDLRP01130 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.22■□□□□ 0.19
LDLRP01130 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.22■□□□□ 0.19
LDLRP01130 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.22■□□□□ 0.19
LDLRP01130 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LDLRP01130 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.22■□□□□ 0.19
LDLRP01130 DNAJB3-201ENST00000446806 729 ntBASIC16.22■□□□□ 0.19
LDLRP01130 AC112482.1-201ENST00000492080 688 ntBASIC16.22■□□□□ 0.19
LDLRP01130 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.22■□□□□ 0.19
LDLRP01130 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.22■□□□□ 0.19
LDLRP01130 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
LDLRP01130 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.22■□□□□ 0.19
LDLRP01130 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
LDLRP01130 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LDLRP01130 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.22■□□□□ 0.19
LDLRP01130 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LDLRP01130 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.22■□□□□ 0.19
LDLRP01130 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.21■□□□□ 0.19
LDLRP01130 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 AC103702.1-201ENST00000548801 2630 ntBASIC16.21■□□□□ 0.19
LDLRP01130 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.21■□□□□ 0.19
LDLRP01130 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LDLRP01130 LINC00554-201ENST00000564841 3011 ntBASIC16.21■□□□□ 0.19
LDLRP01130 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.21■□□□□ 0.19
LDLRP01130 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 AC002558.1-201ENST00000488906 803 ntBASIC16.21■□□□□ 0.19
LDLRP01130 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LDLRP01130 AC034105.1-201ENST00000563488 319 ntBASIC16.21■□□□□ 0.19
LDLRP01130 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.21■□□□□ 0.19
LDLRP01130 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms