Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MBD3O95983 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
MBD3O95983 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC19.22■□□□□ 0.67
MBD3O95983 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.22■□□□□ 0.67
MBD3O95983 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MBD3O95983 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MBD3O95983 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MBD3O95983 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
MBD3O95983 SNX33P1-201ENST00000592116 1762 ntBASIC19.21■□□□□ 0.67
MBD3O95983 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
MBD3O95983 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
MBD3O95983 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.21■□□□□ 0.67
MBD3O95983 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC19.21■□□□□ 0.67
MBD3O95983 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.21■□□□□ 0.67
MBD3O95983 AC090616.6-201ENST00000582640 721 ntBASIC19.21■□□□□ 0.67
MBD3O95983 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
MBD3O95983 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MBD3O95983 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.21■□□□□ 0.67
MBD3O95983 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
MBD3O95983 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.21■□□□□ 0.67
MBD3O95983 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.66
MBD3O95983 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.2■□□□□ 0.66
MBD3O95983 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 CDC14C-201ENST00000428251 1719 ntBASIC19.2■□□□□ 0.66
MBD3O95983 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
MBD3O95983 AL512652.2-201ENST00000625156 1716 ntBASIC19.2■□□□□ 0.66
MBD3O95983 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 AL031731.1-201ENST00000642131 2094 ntBASIC19.2■□□□□ 0.66
MBD3O95983 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
MBD3O95983 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 AC148477.5-201ENST00000625164 1645 ntBASIC19.2■□□□□ 0.66
MBD3O95983 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 AC112504.1-201ENST00000623415 1841 ntBASIC19.2■□□□□ 0.66
MBD3O95983 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 AC013268.4-201ENST00000637413 2228 ntBASIC19.2■□□□□ 0.66
MBD3O95983 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
MBD3O95983 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
MBD3O95983 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.2■□□□□ 0.66
MBD3O95983 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.19■□□□□ 0.66
MBD3O95983 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.19■□□□□ 0.66
MBD3O95983 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.19■□□□□ 0.66
MBD3O95983 LINC02447-202ENST00000501888 2146 ntBASIC19.19■□□□□ 0.66
MBD3O95983 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
MBD3O95983 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
MBD3O95983 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.19■□□□□ 0.66
MBD3O95983 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.19■□□□□ 0.66
MBD3O95983 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 AL020989.1-201ENST00000422979 469 ntBASIC19.19■□□□□ 0.66
MBD3O95983 AC117947.1-201ENST00000427448 529 ntBASIC19.19■□□□□ 0.66
MBD3O95983 TSPY22P-201ENST00000427496 604 ntBASIC19.19■□□□□ 0.66
MBD3O95983 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MBD3O95983 SPDYE13P-201ENST00000445314 798 ntBASIC19.19■□□□□ 0.66
MBD3O95983 POU5F1P6-201ENST00000466990 990 ntBASIC19.19■□□□□ 0.66
MBD3O95983 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.19■□□□□ 0.66
MBD3O95983 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.19■□□□□ 0.66
MBD3O95983 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.19■□□□□ 0.66
MBD3O95983 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
MBD3O95983 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms