Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC21.01■□□□□ 0.95
NPHP1O15259 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 HLA-J-202ENST00000469281 1241 ntBASIC21.01■□□□□ 0.95
NPHP1O15259 RARRES2P9-201ENST00000565168 469 ntBASIC21.01■□□□□ 0.95
NPHP1O15259 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.01■□□□□ 0.95
NPHP1O15259 AL662799.1-202ENST00000614205 422 ntBASIC21.01■□□□□ 0.95
NPHP1O15259 AL590560.3-201ENST00000623350 461 ntBASIC21.01■□□□□ 0.95
NPHP1O15259 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP1O15259 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
NPHP1O15259 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC21■□□□□ 0.95
NPHP1O15259 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
NPHP1O15259 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 RN7SL692P-201ENST00000464677 288 ntBASIC21■□□□□ 0.95
NPHP1O15259 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NPHP1O15259 KRT18P34-201ENST00000488218 1270 ntBASIC21■□□□□ 0.95
NPHP1O15259 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
NPHP1O15259 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC21■□□□□ 0.95
NPHP1O15259 AC105233.2-201ENST00000523697 349 ntBASIC21■□□□□ 0.95
NPHP1O15259 AF228730.5-201ENST00000530288 346 ntBASIC21■□□□□ 0.95
NPHP1O15259 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC21■□□□□ 0.95
NPHP1O15259 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC21■□□□□ 0.95
NPHP1O15259 COQ9-214ENST00000567933 882 ntTSL 3 BASIC21■□□□□ 0.95
NPHP1O15259 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC21■□□□□ 0.95
NPHP1O15259 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21■□□□□ 0.95
NPHP1O15259 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
NPHP1O15259 AC025048.6-201ENST00000634326 1161 ntBASIC21■□□□□ 0.95
NPHP1O15259 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
NPHP1O15259 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
NPHP1O15259 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NPHP1O15259 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP1O15259 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP1O15259 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
NPHP1O15259 AL021920.2-201ENST00000624828 1351 ntBASIC20.99■□□□□ 0.95
NPHP1O15259 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
NPHP1O15259 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP1O15259 AC022144.1-201ENST00000602255 1580 ntBASIC20.99■□□□□ 0.95
NPHP1O15259 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NPHP1O15259 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC20.99■□□□□ 0.95
NPHP1O15259 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.99■□□□□ 0.95
NPHP1O15259 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.99■□□□□ 0.95
NPHP1O15259 MPDU1-223ENST00000582151 728 ntBASIC20.99■□□□□ 0.95
NPHP1O15259 AC021097.1-201ENST00000607902 574 ntBASIC20.99■□□□□ 0.95
NPHP1O15259 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.99■□□□□ 0.95
NPHP1O15259 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC20.99■□□□□ 0.95
NPHP1O15259 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP1O15259 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
NPHP1O15259 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
NPHP1O15259 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.99■□□□□ 0.95
NPHP1O15259 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP1O15259 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NPHP1O15259 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NPHP1O15259 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NPHP1O15259 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
NPHP1O15259 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NPHP1O15259 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP1O15259 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NPHP1O15259 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP1O15259 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP1O15259 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.98■□□□□ 0.95
NPHP1O15259 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP1O15259 KRT17P7-201ENST00000451704 1104 ntBASIC20.98■□□□□ 0.95
NPHP1O15259 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NPHP1O15259 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP1O15259 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.98■□□□□ 0.95
NPHP1O15259 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
NPHP1O15259 SPDYE12P-201ENST00000618416 771 ntBASIC20.98■□□□□ 0.95
NPHP1O15259 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.98■□□□□ 0.95
NPHP1O15259 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NPHP1O15259 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.98■□□□□ 0.95
NPHP1O15259 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NPHP1O15259 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms