Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC079328.2-201ENST00000561241 3354 ntBASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 FAM8A3P-201ENST00000427218 844 ntBASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC027612.4-201ENST00000605371 583 ntBASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC106028.4-201ENST00000614509 607 ntBASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.47■□□□□ 0.23
TMX2-CTNND1H3BSU7 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 AL355312.1-201ENST00000407115 2176 ntBASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 AC046185.3-201ENST00000623228 1824 ntBASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TMX2-CTNND1H3BSU7 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.22
TMX2-CTNND1H3BSU7 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.46■□□□□ 0.22
TMX2-CTNND1H3BSU7 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TMX2-CTNND1H3BSU7 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.45■□□□□ 0.22
TMX2-CTNND1H3BSU7 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
TMX2-CTNND1H3BSU7 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TMX2-CTNND1H3BSU7 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms