Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 USP32P1-208ENST00000506594 1164 ntBASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 AGER-214ENST00000538695 487 ntTSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 FZD10-202ENST00000539839 3282 ntBASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ZC3H4Q9UPT8 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 RNA5SP410-201ENST00000516285 106 ntBASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AL033527.5-201ENST00000641382 801 ntBASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ZC3H4Q9UPT8 AC073439.1-201ENST00000624121 1774 ntBASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 BRWD1P1-201ENST00000401091 371 ntBASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AC098850.1-201ENST00000419919 790 ntBASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AC233724.13-201ENST00000598383 410 ntBASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AC004461.2-201ENST00000629517 803 ntBASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AL033527.5-202ENST00000641632 1098 ntBASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ZC3H4Q9UPT8 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 FADS2-205ENST00000517839 469 ntTSL 3 BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.03■□□□□ 0.8
ZC3H4Q9UPT8 PIGL-212ENST00000581006 554 ntTSL 4 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms