Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 WASH4P-201ENST00000564273 1246 ntBASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 AL606495.2-201ENST00000605867 535 ntBASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC87Q9NVE4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.95■□□□□ 0.95
CCDC87Q9NVE4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CCDC87Q9NVE4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 AC093724.1-201ENST00000448659 1027 ntBASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 AC093004.1-201ENST00000508850 424 ntBASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 AC132938.2-201ENST00000579188 680 ntBASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 AC008494.3-201ENST00000606615 944 ntBASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 AL591163.1-201ENST00000641757 987 ntBASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 AC092068.3-201ENST00000587894 2016 ntBASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC87Q9NVE4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 MIR658-201ENST00000385210 100 ntBASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 AC114501.2-201ENST00000439631 535 ntBASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 AC106886.1-201ENST00000568660 600 ntBASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 TEX48-202ENST00000612244 662 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC87Q9NVE4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 PCDHB17P-201ENST00000539533 2393 ntBASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 AC112492.5-201ENST00000421897 457 ntBASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 KRT17P8-201ENST00000540749 863 ntBASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 RAB43P1-201ENST00000561790 589 ntBASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC87Q9NVE4 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 BCL2-203ENST00000589955 5011 ntBASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 SERBP1P3-201ENST00000459980 809 ntBASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 AC061975.2-201ENST00000581722 295 ntBASIC20.92■□□□□ 0.94
CCDC87Q9NVE4 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms