Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.59■□□□□ 0.57
VTA1Q9NP79 AC004233.3-201ENST00000607794 1269 ntBASIC18.59■□□□□ 0.57
VTA1Q9NP79 AL662799.1-202ENST00000614205 422 ntBASIC18.59■□□□□ 0.57
VTA1Q9NP79 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VTA1Q9NP79 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VTA1Q9NP79 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.59■□□□□ 0.57
VTA1Q9NP79 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.59■□□□□ 0.57
VTA1Q9NP79 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VTA1Q9NP79 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.59■□□□□ 0.57
VTA1Q9NP79 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VTA1Q9NP79 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
VTA1Q9NP79 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.58■□□□□ 0.57
VTA1Q9NP79 AC068880.1-201ENST00000507289 2297 ntBASIC18.58■□□□□ 0.57
VTA1Q9NP79 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
VTA1Q9NP79 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VTA1Q9NP79 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VTA1Q9NP79 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
VTA1Q9NP79 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VTA1Q9NP79 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VTA1Q9NP79 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VTA1Q9NP79 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.58■□□□□ 0.57
VTA1Q9NP79 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.58■□□□□ 0.57
VTA1Q9NP79 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VTA1Q9NP79 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VTA1Q9NP79 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VTA1Q9NP79 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VTA1Q9NP79 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VTA1Q9NP79 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 RPL37AP1-201ENST00000412502 279 ntBASIC18.58■□□□□ 0.56
VTA1Q9NP79 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 AL844908.2-201ENST00000609461 460 ntBASIC18.58■□□□□ 0.56
VTA1Q9NP79 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VTA1Q9NP79 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VTA1Q9NP79 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VTA1Q9NP79 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VTA1Q9NP79 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.58■□□□□ 0.56
VTA1Q9NP79 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.57■□□□□ 0.56
VTA1Q9NP79 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
VTA1Q9NP79 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
VTA1Q9NP79 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 AL391256.1-201ENST00000443260 1855 ntBASIC18.57■□□□□ 0.56
VTA1Q9NP79 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.57■□□□□ 0.56
VTA1Q9NP79 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VTA1Q9NP79 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 AC009407.1-201ENST00000568958 598 ntBASIC18.57■□□□□ 0.56
VTA1Q9NP79 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.57■□□□□ 0.56
VTA1Q9NP79 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 AL133215.2-201ENST00000609242 977 ntBASIC18.57■□□□□ 0.56
VTA1Q9NP79 AC025048.6-201ENST00000634326 1161 ntBASIC18.57■□□□□ 0.56
VTA1Q9NP79 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
VTA1Q9NP79 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VTA1Q9NP79 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 AC020765.3-201ENST00000613051 740 ntBASIC18.56■□□□□ 0.56
VTA1Q9NP79 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.56■□□□□ 0.56
VTA1Q9NP79 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VTA1Q9NP79 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.55■□□□□ 0.56
VTA1Q9NP79 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VTA1Q9NP79 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.55■□□□□ 0.56
VTA1Q9NP79 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
VTA1Q9NP79 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms