Protein–RNA interactions for Protein: Q9BZS1

FOXP3, Forkhead box protein P3, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXP3Q9BZS1 MIR7706-201ENST00000613747 67 ntBASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXP3Q9BZS1 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 HNRNPDP1-201ENST00000439535 754 ntBASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 POLD2P1-201ENST00000511220 997 ntBASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXP3Q9BZS1 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 KRT18P13-201ENST00000400056 1290 ntBASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 RBM17P3-201ENST00000417687 1192 ntBASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 KRT18P58-201ENST00000527480 1120 ntBASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 AC139887.3-201ENST00000568585 713 ntBASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 AC117500.6-201ENST00000624871 588 ntBASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 FAM215A-202ENST00000632077 792 ntBASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXP3Q9BZS1 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXP3Q9BZS1 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
FOXP3Q9BZS1 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
FOXP3Q9BZS1 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms