Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 SPCS2P4-201ENST00000436160 681 ntBASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 AC106028.4-201ENST00000614509 607 ntBASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 AP001350.2-201ENST00000625104 1094 ntBASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAIPQ9BWF2 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 AL021920.2-201ENST00000624828 1351 ntBASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 AC131009.4-201ENST00000624048 1740 ntBASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 MIR770-201ENST00000390219 98 ntBASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 AC005237.2-201ENST00000434368 219 ntBASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 MIR4492-201ENST00000581627 80 ntBASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 WASH6P-202ENST00000359512 1437 ntBASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAIPQ9BWF2 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 AL031055.1-201ENST00000606362 631 ntBASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 AP001059.3-201ENST00000619053 235 ntBASIC18.29■□□□□ 0.52
TRAIPQ9BWF2 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms