Protein–RNA interactions for Protein: Q99616

CCL13, C-C motif chemokine 13, humanhuman

Predictions only

Length 98 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL13Q99616 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.03□□□□□ -0.16
CCL13Q99616 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC14.03□□□□□ -0.16
CCL13Q99616 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
CCL13Q99616 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.03□□□□□ -0.16
CCL13Q99616 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 KRT19P2-202ENST00000557173 1012 ntBASIC14.03□□□□□ -0.16
CCL13Q99616 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CCL13Q99616 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 AC013467.2-201ENST00000605472 835 ntBASIC14.03□□□□□ -0.16
CCL13Q99616 AC092865.6-201ENST00000642101 219 ntBASIC14.03□□□□□ -0.16
CCL13Q99616 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
CCL13Q99616 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.03□□□□□ -0.16
CCL13Q99616 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.03□□□□□ -0.16
CCL13Q99616 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.03□□□□□ -0.16
CCL13Q99616 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCL13Q99616 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCL13Q99616 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
CCL13Q99616 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
CCL13Q99616 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.02□□□□□ -0.16
CCL13Q99616 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCL13Q99616 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCL13Q99616 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCL13Q99616 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.02□□□□□ -0.16
CCL13Q99616 AC009053.2-201ENST00000563701 2365 ntBASIC14.02□□□□□ -0.16
CCL13Q99616 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCL13Q99616 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.02□□□□□ -0.16
CCL13Q99616 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCL13Q99616 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCL13Q99616 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.02□□□□□ -0.17
CCL13Q99616 DDT-204ENST00000404092 805 ntTSL 3 BASIC14.02□□□□□ -0.17
CCL13Q99616 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.02□□□□□ -0.17
CCL13Q99616 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.02□□□□□ -0.17
CCL13Q99616 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.02□□□□□ -0.17
CCL13Q99616 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.02□□□□□ -0.17
CCL13Q99616 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.02□□□□□ -0.17
CCL13Q99616 AL031432.2-201ENST00000566714 459 ntBASIC14.02□□□□□ -0.17
CCL13Q99616 AL928711.1-201ENST00000570165 459 ntBASIC14.02□□□□□ -0.17
CCL13Q99616 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 AL645728.2-201ENST00000641974 660 ntBASIC14.02□□□□□ -0.17
CCL13Q99616 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.02□□□□□ -0.17
CCL13Q99616 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CCL13Q99616 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
CCL13Q99616 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.02□□□□□ -0.17
CCL13Q99616 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
CCL13Q99616 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCL13Q99616 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCL13Q99616 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CCL13Q99616 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 UBALD1-205ENST00000590891 2641 ntBASIC14.01□□□□□ -0.17
CCL13Q99616 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC14.01□□□□□ -0.17
CCL13Q99616 FLJ38576-201ENST00000623820 2459 ntBASIC14.01□□□□□ -0.17
CCL13Q99616 AL671710.1-201ENST00000610245 2349 ntBASIC14.01□□□□□ -0.17
CCL13Q99616 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CCL13Q99616 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCL13Q99616 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms