Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.7■□□□□ 0.74
BRF1Q92994 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.7■□□□□ 0.74
BRF1Q92994 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.7■□□□□ 0.74
BRF1Q92994 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.7■□□□□ 0.74
BRF1Q92994 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.7■□□□□ 0.74
BRF1Q92994 AL031731.1-201ENST00000642131 2094 ntBASIC19.7■□□□□ 0.74
BRF1Q92994 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
BRF1Q92994 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
BRF1Q92994 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.7■□□□□ 0.74
BRF1Q92994 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
BRF1Q92994 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
BRF1Q92994 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.7■□□□□ 0.74
BRF1Q92994 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
BRF1Q92994 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 GGT4P-201ENST00000623672 1708 ntBASIC19.69■□□□□ 0.74
BRF1Q92994 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 HCG4-201ENST00000418983 998 ntBASIC19.69■□□□□ 0.74
BRF1Q92994 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC19.69■□□□□ 0.74
BRF1Q92994 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
BRF1Q92994 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.69■□□□□ 0.74
BRF1Q92994 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
BRF1Q92994 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
BRF1Q92994 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
BRF1Q92994 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.69■□□□□ 0.74
BRF1Q92994 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.68■□□□□ 0.74
BRF1Q92994 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
BRF1Q92994 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
BRF1Q92994 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
BRF1Q92994 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.68■□□□□ 0.74
BRF1Q92994 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
BRF1Q92994 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
BRF1Q92994 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.68■□□□□ 0.74
BRF1Q92994 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.68■□□□□ 0.74
BRF1Q92994 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.68■□□□□ 0.74
BRF1Q92994 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.68■□□□□ 0.74
BRF1Q92994 HCG4B-203ENST00000450128 991 ntBASIC19.68■□□□□ 0.74
BRF1Q92994 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
BRF1Q92994 Z83851.2-201ENST00000609564 659 ntBASIC19.68■□□□□ 0.74
BRF1Q92994 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.68■□□□□ 0.74
BRF1Q92994 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.68■□□□□ 0.74
BRF1Q92994 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 GGT3P-204ENST00000453783 1664 ntBASIC19.68■□□□□ 0.74
BRF1Q92994 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
BRF1Q92994 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
BRF1Q92994 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
BRF1Q92994 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
BRF1Q92994 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 ME2P1-201ENST00000426028 1970 ntBASIC19.67■□□□□ 0.74
BRF1Q92994 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 CRYGEP-201ENST00000412192 528 ntBASIC19.67■□□□□ 0.74
BRF1Q92994 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.67■□□□□ 0.74
BRF1Q92994 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.67■□□□□ 0.74
BRF1Q92994 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.67■□□□□ 0.74
BRF1Q92994 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.67■□□□□ 0.74
BRF1Q92994 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.67■□□□□ 0.74
BRF1Q92994 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.67■□□□□ 0.74
BRF1Q92994 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.67■□□□□ 0.74
BRF1Q92994 AP001350.2-201ENST00000625104 1094 ntBASIC19.67■□□□□ 0.74
BRF1Q92994 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
BRF1Q92994 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms