Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HMGCS2P54868 PCDHB17P-201ENST00000539533 2393 ntBASIC19.18■□□□□ 0.66
HMGCS2P54868 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HMGCS2P54868 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
HMGCS2P54868 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 AC067852.2-201ENST00000590513 2313 ntBASIC19.17■□□□□ 0.66
HMGCS2P54868 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HMGCS2P54868 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGCS2P54868 AL080243.2-201ENST00000418783 582 ntBASIC19.17■□□□□ 0.66
HMGCS2P54868 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGCS2P54868 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC19.17■□□□□ 0.66
HMGCS2P54868 TP53TG3HP-202ENST00000569755 579 ntBASIC19.17■□□□□ 0.66
HMGCS2P54868 RNA5-8SN1-201ENST00000610460 153 ntBASIC19.17■□□□□ 0.66
HMGCS2P54868 RNA5-8SN5-202ENST00000612463 153 ntBASIC19.17■□□□□ 0.66
HMGCS2P54868 RNA5-8SN4-201ENST00000613359 153 ntBASIC19.17■□□□□ 0.66
HMGCS2P54868 RNA5-8SN5-201ENST00000619471 153 ntBASIC19.17■□□□□ 0.66
HMGCS2P54868 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGCS2P54868 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGCS2P54868 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
HMGCS2P54868 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGCS2P54868 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HMGCS2P54868 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGCS2P54868 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HMGCS2P54868 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
HMGCS2P54868 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC19.16■□□□□ 0.66
HMGCS2P54868 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 AC007274.1-201ENST00000439805 662 ntBASIC19.16■□□□□ 0.66
HMGCS2P54868 NAA50-208ENST00000497255 789 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGCS2P54868 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGCS2P54868 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC19.16■□□□□ 0.66
HMGCS2P54868 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC19.16■□□□□ 0.66
HMGCS2P54868 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGCS2P54868 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGCS2P54868 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGCS2P54868 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGCS2P54868 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGCS2P54868 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HMGCS2P54868 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HMGCS2P54868 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGCS2P54868 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGCS2P54868 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.15■□□□□ 0.66
HMGCS2P54868 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HMGCS2P54868 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGCS2P54868 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGCS2P54868 KRT17P7-201ENST00000451704 1104 ntBASIC19.15■□□□□ 0.66
HMGCS2P54868 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGCS2P54868 API5-211ENST00000534695 560 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGCS2P54868 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HMGCS2P54868 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.15■□□□□ 0.66
HMGCS2P54868 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGCS2P54868 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGCS2P54868 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGCS2P54868 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
HMGCS2P54868 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
HMGCS2P54868 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
HMGCS2P54868 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGCS2P54868 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HMGCS2P54868 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms