Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
MSX2P35548 KRT18P22-201ENST00000402024 1347 ntBASIC16.04■□□□□ 0.16
MSX2P35548 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
MSX2P35548 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
MSX2P35548 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
MSX2P35548 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.04■□□□□ 0.16
MSX2P35548 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 COX11P1-201ENST00000489116 835 ntBASIC16.04■□□□□ 0.16
MSX2P35548 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
MSX2P35548 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.04■□□□□ 0.16
MSX2P35548 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 NORAD-201ENST00000565493 5339 ntBASIC16.04■□□□□ 0.16
MSX2P35548 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
MSX2P35548 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.04■□□□□ 0.16
MSX2P35548 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.04■□□□□ 0.16
MSX2P35548 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.04■□□□□ 0.16
MSX2P35548 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.04■□□□□ 0.16
MSX2P35548 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 AP003680.1-201ENST00000598970 3660 ntBASIC16.04■□□□□ 0.16
MSX2P35548 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.04■□□□□ 0.16
MSX2P35548 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
MSX2P35548 TNRC18P2-201ENST00000417666 2714 ntBASIC16.03■□□□□ 0.16
MSX2P35548 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.03■□□□□ 0.16
MSX2P35548 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
MSX2P35548 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.03■□□□□ 0.16
MSX2P35548 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
MSX2P35548 AC005336.2-201ENST00000593183 939 ntBASIC16.03■□□□□ 0.16
MSX2P35548 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 AL138831.2-201ENST00000606564 490 ntBASIC16.03■□□□□ 0.16
MSX2P35548 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.03■□□□□ 0.16
MSX2P35548 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.03■□□□□ 0.16
MSX2P35548 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.03■□□□□ 0.16
MSX2P35548 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
MSX2P35548 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSX2P35548 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
MSX2P35548 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
MSX2P35548 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
MSX2P35548 LINC00895-201ENST00000629028 1637 ntBASIC16.02■□□□□ 0.16
MSX2P35548 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.02■□□□□ 0.16
MSX2P35548 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
MSX2P35548 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
MSX2P35548 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms