Protein–RNA interactions for Protein: P30408

TM4SF1, Transmembrane 4 L6 family member 1, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1P30408 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.54■□□□□ 0.88
TM4SF1P30408 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TM4SF1P30408 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM4SF1P30408 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TM4SF1P30408 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM4SF1P30408 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM4SF1P30408 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TM4SF1P30408 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
TM4SF1P30408 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
TM4SF1P30408 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.53■□□□□ 0.88
TM4SF1P30408 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 ANKRD19P-201ENST00000338192 862 ntBASIC20.53■□□□□ 0.88
TM4SF1P30408 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
TM4SF1P30408 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
TM4SF1P30408 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.53■□□□□ 0.88
TM4SF1P30408 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.53■□□□□ 0.88
TM4SF1P30408 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.53■□□□□ 0.88
TM4SF1P30408 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.53■□□□□ 0.88
TM4SF1P30408 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20.53■□□□□ 0.88
TM4SF1P30408 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.53■□□□□ 0.88
TM4SF1P30408 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.53■□□□□ 0.88
TM4SF1P30408 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
TM4SF1P30408 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.53■□□□□ 0.88
TM4SF1P30408 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TM4SF1P30408 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
TM4SF1P30408 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TM4SF1P30408 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TM4SF1P30408 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.52■□□□□ 0.88
TM4SF1P30408 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.52■□□□□ 0.88
TM4SF1P30408 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.52■□□□□ 0.88
TM4SF1P30408 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.52■□□□□ 0.88
TM4SF1P30408 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TM4SF1P30408 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 FAM86MP-201ENST00000340703 885 ntBASIC20.52■□□□□ 0.88
TM4SF1P30408 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
TM4SF1P30408 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.52■□□□□ 0.88
TM4SF1P30408 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 KRT223P-202ENST00000449164 1292 ntBASIC20.52■□□□□ 0.88
TM4SF1P30408 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC20.52■□□□□ 0.88
TM4SF1P30408 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.52■□□□□ 0.88
TM4SF1P30408 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC20.52■□□□□ 0.88
TM4SF1P30408 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.52■□□□□ 0.88
TM4SF1P30408 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC20.52■□□□□ 0.88
TM4SF1P30408 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 AC008735.3-201ENST00000596646 500 ntBASIC20.52■□□□□ 0.88
TM4SF1P30408 MIR8072-201ENST00000614241 80 ntBASIC20.52■□□□□ 0.88
TM4SF1P30408 MIR6069-201ENST00000620069 79 ntBASIC20.52■□□□□ 0.88
TM4SF1P30408 CROCCP2-202ENST00000412962 2773 ntBASIC20.52■□□□□ 0.88
TM4SF1P30408 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.52■□□□□ 0.88
TM4SF1P30408 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.52■□□□□ 0.88
TM4SF1P30408 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.52■□□□□ 0.88
TM4SF1P30408 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.52■□□□□ 0.88
TM4SF1P30408 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TM4SF1P30408 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
TM4SF1P30408 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.51■□□□□ 0.87
TM4SF1P30408 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.51■□□□□ 0.87
TM4SF1P30408 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.51■□□□□ 0.87
TM4SF1P30408 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.51■□□□□ 0.87
TM4SF1P30408 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 CROCCP4-201ENST00000457096 498 ntBASIC20.51■□□□□ 0.87
TM4SF1P30408 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC20.51■□□□□ 0.87
TM4SF1P30408 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.51■□□□□ 0.87
TM4SF1P30408 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 AC026979.3-201ENST00000607315 403 ntBASIC20.51■□□□□ 0.87
TM4SF1P30408 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
TM4SF1P30408 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TM4SF1P30408 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TM4SF1P30408 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC20.5■□□□□ 0.87
TM4SF1P30408 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms