Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL049757.1-201ENST00000616842 1596 ntBASIC16.78■□□□□ 0.28
SHOX2O60902 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHOX2O60902 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHOX2O60902 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.78■□□□□ 0.28
SHOX2O60902 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.78■□□□□ 0.28
SHOX2O60902 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.78■□□□□ 0.28
SHOX2O60902 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.78■□□□□ 0.28
SHOX2O60902 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHOX2O60902 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.78■□□□□ 0.28
SHOX2O60902 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SHOX2O60902 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.78■□□□□ 0.28
SHOX2O60902 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 AL391807.1-203ENST00000604392 2365 ntBASIC16.78■□□□□ 0.28
SHOX2O60902 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
SHOX2O60902 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHOX2O60902 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.77■□□□□ 0.28
SHOX2O60902 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
SHOX2O60902 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.77■□□□□ 0.28
SHOX2O60902 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SHOX2O60902 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.77■□□□□ 0.28
SHOX2O60902 BX088651.1-201ENST00000540551 451 ntBASIC16.77■□□□□ 0.28
SHOX2O60902 AP005242.2-201ENST00000580065 1175 ntBASIC16.77■□□□□ 0.28
SHOX2O60902 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.77■□□□□ 0.28
SHOX2O60902 AP001412.1-201ENST00000608405 714 ntBASIC16.77■□□□□ 0.28
SHOX2O60902 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.77■□□□□ 0.28
SHOX2O60902 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SHOX2O60902 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHOX2O60902 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.77■□□□□ 0.27
SHOX2O60902 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.77■□□□□ 0.27
SHOX2O60902 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.77■□□□□ 0.27
SHOX2O60902 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.77■□□□□ 0.27
SHOX2O60902 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 AL021920.2-201ENST00000624828 1351 ntBASIC16.77■□□□□ 0.27
SHOX2O60902 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SHOX2O60902 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
SHOX2O60902 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.76■□□□□ 0.27
SHOX2O60902 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.76■□□□□ 0.27
SHOX2O60902 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SHOX2O60902 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.76■□□□□ 0.27
SHOX2O60902 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
SHOX2O60902 TSPY7P-201ENST00000431358 1114 ntBASIC16.76■□□□□ 0.27
SHOX2O60902 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.76■□□□□ 0.27
SHOX2O60902 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 RBM17P1-201ENST00000453646 1190 ntBASIC16.76■□□□□ 0.27
SHOX2O60902 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.76■□□□□ 0.27
SHOX2O60902 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.76■□□□□ 0.27
SHOX2O60902 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.76■□□□□ 0.27
SHOX2O60902 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.76■□□□□ 0.27
SHOX2O60902 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.76■□□□□ 0.27
SHOX2O60902 AP000525.1-201ENST00000608286 694 ntBASIC16.76■□□□□ 0.27
SHOX2O60902 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 CICP14-201ENST00000629111 2732 ntBASIC16.76■□□□□ 0.27
SHOX2O60902 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SHOX2O60902 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SHOX2O60902 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC16.76■□□□□ 0.27
SHOX2O60902 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHOX2O60902 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms