Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.34■□□□□ 0.21
HDAC3O15379 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HDAC3O15379 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.34■□□□□ 0.21
HDAC3O15379 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HDAC3O15379 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HDAC3O15379 SNX33P1-201ENST00000592116 1762 ntBASIC16.34■□□□□ 0.21
HDAC3O15379 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
HDAC3O15379 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.34■□□□□ 0.21
HDAC3O15379 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.34■□□□□ 0.21
HDAC3O15379 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HDAC3O15379 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.34■□□□□ 0.21
HDAC3O15379 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.34■□□□□ 0.21
HDAC3O15379 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HDAC3O15379 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HDAC3O15379 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.34■□□□□ 0.21
HDAC3O15379 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.34■□□□□ 0.21
HDAC3O15379 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.34■□□□□ 0.21
HDAC3O15379 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.34■□□□□ 0.21
HDAC3O15379 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.34■□□□□ 0.21
HDAC3O15379 AC073592.4-201ENST00000623827 446 ntBASIC16.34■□□□□ 0.21
HDAC3O15379 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HDAC3O15379 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
HDAC3O15379 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 GID4-202ENST00000376345 1391 ntTSL 3 BASIC16.34■□□□□ 0.21
HDAC3O15379 AC010491.1-201ENST00000563101 2797 ntBASIC16.34■□□□□ 0.21
HDAC3O15379 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 AC092384.3-202ENST00000564646 2873 ntBASIC16.34■□□□□ 0.21
HDAC3O15379 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.34■□□□□ 0.21
HDAC3O15379 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDAC3O15379 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HDAC3O15379 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.33■□□□□ 0.21
HDAC3O15379 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
HDAC3O15379 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.33■□□□□ 0.21
HDAC3O15379 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
HDAC3O15379 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HDAC3O15379 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.33■□□□□ 0.2
HDAC3O15379 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HDAC3O15379 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.33■□□□□ 0.2
HDAC3O15379 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.33■□□□□ 0.2
HDAC3O15379 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HDAC3O15379 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.33■□□□□ 0.2
HDAC3O15379 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
HDAC3O15379 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HDAC3O15379 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.33■□□□□ 0.2
HDAC3O15379 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.33■□□□□ 0.2
HDAC3O15379 AL590787.1-201ENST00000568856 1315 ntBASIC16.33■□□□□ 0.2
HDAC3O15379 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 AC016734.2-201ENST00000624325 1377 ntBASIC16.33■□□□□ 0.2
HDAC3O15379 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.33■□□□□ 0.2
HDAC3O15379 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.33■□□□□ 0.2
HDAC3O15379 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.33■□□□□ 0.2
HDAC3O15379 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.33■□□□□ 0.2
HDAC3O15379 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HDAC3O15379 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.33■□□□□ 0.2
HDAC3O15379 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
HDAC3O15379 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HDAC3O15379 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.33■□□□□ 0.2
HDAC3O15379 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
HDAC3O15379 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.32■□□□□ 0.2
HDAC3O15379 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HDAC3O15379 TOP3BP1-201ENST00000420768 1380 ntBASIC16.32■□□□□ 0.2
HDAC3O15379 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.32■□□□□ 0.2
HDAC3O15379 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.32■□□□□ 0.2
HDAC3O15379 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDAC3O15379 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms