Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ID1-201ENST00000376105 1233 ntBASIC12.3□□□□□ -0.44
SMKR1H3BMG3 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AC128688.1-201ENST00000487626 519 ntBASIC12.3□□□□□ -0.44
SMKR1H3BMG3 EGLN1P1-201ENST00000531623 762 ntBASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
SMKR1H3BMG3 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AC013268.4-201ENST00000637413 2228 ntBASIC12.29□□□□□ -0.44
SMKR1H3BMG3 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 TNRC18P2-201ENST00000417666 2714 ntBASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AC142381.4-202ENST00000563973 229 ntBASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AL512604.3-201ENST00000569583 964 ntBASIC12.29□□□□□ -0.44
SMKR1H3BMG3 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 AL353692.3-201ENST00000407031 1396 ntBASIC12.29□□□□□ -0.44
SMKR1H3BMG3 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
SMKR1H3BMG3 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms