Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 AC254562.1-201ENST00000417586 456 ntBASIC17.85■□□□□ 0.45
SIX4Q9UIU6 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 LINC01225-203ENST00000563550 1244 ntBASIC17.85■□□□□ 0.45
SIX4Q9UIU6 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 AL596442.2-201ENST00000610240 980 ntBASIC17.85■□□□□ 0.45
SIX4Q9UIU6 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SIX4Q9UIU6 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SPCS2P4-201ENST00000436160 681 ntBASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SPDYE11-202ENST00000450699 704 ntBASIC17.84■□□□□ 0.45
SIX4Q9UIU6 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 AP000344.2-201ENST00000512987 629 ntBASIC17.84■□□□□ 0.45
SIX4Q9UIU6 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 AC093520.2-201ENST00000561830 333 ntBASIC17.84■□□□□ 0.45
SIX4Q9UIU6 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 AL138918.1-201ENST00000568306 659 ntBASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SPDYE9P-201ENST00000570642 692 ntBASIC17.84■□□□□ 0.45
SIX4Q9UIU6 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SPDYE10P-202ENST00000612005 668 ntBASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SPDYE8P-202ENST00000612377 668 ntBASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX4Q9UIU6 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 GGT3P-204ENST00000453783 1664 ntBASIC17.83■□□□□ 0.45
SIX4Q9UIU6 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.83■□□□□ 0.45
SIX4Q9UIU6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 CNN2P11-201ENST00000429351 262 ntBASIC17.83■□□□□ 0.44
SIX4Q9UIU6 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 RN7SL589P-201ENST00000481268 310 ntBASIC17.83■□□□□ 0.44
SIX4Q9UIU6 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 AC027612.4-201ENST00000605371 583 ntBASIC17.83■□□□□ 0.44
SIX4Q9UIU6 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.83■□□□□ 0.44
SIX4Q9UIU6 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms