Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
NPAS1Q99742 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.29■□□□□ 0.04
NPAS1Q99742 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 AL021920.2-201ENST00000624828 1351 ntBASIC15.29■□□□□ 0.04
NPAS1Q99742 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 AC129492.6-201ENST00000611383 1305 ntBASIC15.29■□□□□ 0.04
NPAS1Q99742 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.29■□□□□ 0.04
NPAS1Q99742 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NPAS1Q99742 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.29■□□□□ 0.04
NPAS1Q99742 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.29■□□□□ 0.04
NPAS1Q99742 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 MPDU1-223ENST00000582151 728 ntBASIC15.29■□□□□ 0.04
NPAS1Q99742 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.29■□□□□ 0.04
NPAS1Q99742 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 FAM197Y3-203ENST00000618346 717 ntBASIC15.29■□□□□ 0.04
NPAS1Q99742 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.29■□□□□ 0.04
NPAS1Q99742 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
NPAS1Q99742 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
NPAS1Q99742 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
NPAS1Q99742 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
NPAS1Q99742 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPAS1Q99742 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS1Q99742 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS1Q99742 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.28■□□□□ 0.04
NPAS1Q99742 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
NPAS1Q99742 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
NPAS1Q99742 TUBB8P12-201ENST00000308911 1335 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 TUBB7P-202ENST00000428444 1305 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 TUBB8P7-204ENST00000567960 1332 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
NPAS1Q99742 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 AC023274.1-201ENST00000418278 595 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 RHOQP3-201ENST00000437982 621 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS1Q99742 KRT18P58-201ENST00000527480 1120 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.28■□□□□ 0.04
NPAS1Q99742 AC096734.2-201ENST00000562054 433 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 AC004877.2-201ENST00000623941 599 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 AL391256.1-201ENST00000443260 1855 ntBASIC15.28■□□□□ 0.04
NPAS1Q99742 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.28■□□□□ 0.04
NPAS1Q99742 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
NPAS1Q99742 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPAS1Q99742 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS1Q99742 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.27■□□□□ 0.04
NPAS1Q99742 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.27■□□□□ 0.04
NPAS1Q99742 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.27■□□□□ 0.04
NPAS1Q99742 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS1Q99742 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
NPAS1Q99742 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPAS1Q99742 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms