Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 KRT8P19-201ENST00000551916 1455 ntBASIC16.32■□□□□ 0.2
VPS13AQ96RL7 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 RN7SL618P-201ENST00000477850 296 ntBASIC16.32■□□□□ 0.2
VPS13AQ96RL7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 KRT8P12-202ENST00000472924 1397 ntBASIC16.32■□□□□ 0.2
VPS13AQ96RL7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 SPCS2P2-201ENST00000603270 608 ntBASIC16.32■□□□□ 0.2
VPS13AQ96RL7 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 AC004408.2-201ENST00000623613 2777 ntBASIC16.32■□□□□ 0.2
VPS13AQ96RL7 AL033527.5-202ENST00000641632 1098 ntBASIC16.32■□□□□ 0.2
VPS13AQ96RL7 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VPS13AQ96RL7 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.31■□□□□ 0.2
VPS13AQ96RL7 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 BCRP2-202ENST00000447763 634 ntBASIC16.31■□□□□ 0.2
VPS13AQ96RL7 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 BCRP6-201ENST00000510112 632 ntBASIC16.31■□□□□ 0.2
VPS13AQ96RL7 BCRP7-201ENST00000511549 544 ntBASIC16.31■□□□□ 0.2
VPS13AQ96RL7 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 AC092068.3-201ENST00000587894 2016 ntBASIC16.31■□□□□ 0.2
VPS13AQ96RL7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS13AQ96RL7 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 MIR5189-201ENST00000577370 114 ntBASIC16.3■□□□□ 0.2
VPS13AQ96RL7 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 HNRNPUP1-201ENST00000554987 333 ntBASIC16.3■□□□□ 0.2
VPS13AQ96RL7 AC007613.1-201ENST00000572811 2597 ntBASIC16.3■□□□□ 0.2
VPS13AQ96RL7 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS13AQ96RL7 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms